Closed strambc closed 3 years ago
Current Element name: Channel
Current Field name: IlluminationType
Source of change: INTERNAL
Brief description of the change and its rationale (short and compelling): IlluminationType and ImagingMethod had mostly overlapping enumeration values. One was removed and the other changed.
New Element/Field description: "This field describes the Light Microscopy Illumination method performed in this case. Allowable terms were obtained from the Biological Imaging Methods Ontology (Fbbi; https://www.ebi.ac.uk/ols/ontologies/fbbi) Light Microscopy term (http://purl.obolibrary.org/obo/FBbi_00000345)."
New Field enumeration value(s): 4DPlus, Coherent Anti-Stokes Raman Scattering (CARS), Confocal_Fluorescence_array-raster-scan, Confocal_Fluorescence_single-spot-raster-scan, Confocal_Fluorescence_slit-raster-scan, Confocal_Fluorescence_spinning disk, Confocal_Fluorescence_swept-field, Confocal_Fluorescence_Two-photon laser scanning microscopy, Confocal_Fluorescence_Multi-photon laser scanning microscopy, Fluorescence Correlation Spectroscopy (FCS), Light Sheet Fluorescence Microscopy (LSFM), Near Field Scanning Optical Microscopy (NSOM), Optical coherence tomography (OCT), Second-Harmonic Imaging Microscopy (SHIM), Spectral Imaging, SPIM (Selective or Single Plane Illumination Microscopy) , Super-Resolution_GSD (Ground State Depletion Scanning), Super-Resolution_DOPI (Defocussed Oorientation and Position Imaging), Super-Resolution_FIONA (Fluorescence Imaging With One Nanometer Accuracy), Super-Resolution_PAINT (Point Accumulation for Imaging In Nanoscale Topography), Super-Resolution_PALM (Photoactivation Localization Microscopy), Super-Resolution_STORM (Stochastic Optical Reconstruction Microscopy), Super-Resolution_STED (Stimulated Emission Depletion), Super-Resolution_SIM (Structured Illumination Microscopy), TIRF (Total Total Internal Reflection Fluorescence), Transmitted_Bright-field, Transmitted_Dark-field, Transmitted_Dark-field_Evanescent wave scattering, Transmitted_Differential Intensity Contrast (DIC; Nomarski), Transmitted_Hoffman modulation, Transmitted_Phase contrast (Zernicke), Transmitted_Polarization, Transmitted_Oblique illumination, Transmitted_Varel contrast, Wide-field_Fluorescence, Widefield_Fluorescence_FLIM (Fluorescence Lifetime Imaging), Widefield_Fluorescence_FLIP (Fluorescence Loss in Photobleaching), Widefield_Fluorescence_FRAP (Fluorescence Recovery After Photobleaching), Widefield_Fluorescence_FRET (Förster Resonance Energy Transfer), Widefield_Fluorescence_SPIM (Selective or Single Plane Illumination Microscopy), Widefield_Fluorescence_TIRF (Total Internal Reflection Fluorescence), Other
should be solved in 0.45
Akramhar
commented
3 years ago
Current Element name: Channel
Current Field name: IlluminationType
Source of change: INTERNAL
Brief description of the change and its rationale (short and compelling): IlluminationType and ImagingMethod had mostly overlapping enumeration values. One was removed and the other changed.
New Element/Field description: "This field describes the Light Microscopy Illumination method performed in this case. Allowable terms were obtained from the Biological Imaging Methods Ontology (Fbbi; https://www.ebi.ac.uk/ols/ontologies/fbbi) Light Microscopy term (http://purl.obolibrary.org/obo/FBbi_00000345)."
New Field enumeration value(s): 4DPlus, Coherent Anti-Stokes Raman Scattering (CARS), Confocal_Fluorescence_array-raster-scan, Confocal_Fluorescence_single-spot-raster-scan, Confocal_Fluorescence_slit-raster-scan, Confocal_Fluorescence_spinning disk, Confocal_Fluorescence_swept-field, Confocal_Fluorescence_Two-photon laser scanning microscopy, Confocal_Fluorescence_Multi-photon laser scanning microscopy, Fluorescence Correlation Spectroscopy (FCS), Light Sheet Fluorescence Microscopy (LSFM), Near Field Scanning Optical Microscopy (NSOM), Optical coherence tomography (OCT), Second-Harmonic Imaging Microscopy (SHIM), Spectral Imaging, SPIM (Selective or Single Plane Illumination Microscopy) , Super-Resolution_GSD (Ground State Depletion Scanning), Super-Resolution_DOPI (Defocussed Oorientation and Position Imaging), Super-Resolution_FIONA (Fluorescence Imaging With One Nanometer Accuracy), Super-Resolution_PAINT (Point Accumulation for Imaging In Nanoscale Topography), Super-Resolution_PALM (Photoactivation Localization Microscopy), Super-Resolution_STORM (Stochastic Optical Reconstruction Microscopy), Super-Resolution_STED (Stimulated Emission Depletion), Super-Resolution_SIM (Structured Illumination Microscopy), TIRF (Total Total Internal Reflection Fluorescence), Transmitted_Bright-field, Transmitted_Dark-field, Transmitted_Dark-field_Evanescent wave scattering, Transmitted_Differential Intensity Contrast (DIC; Nomarski), Transmitted_Hoffman modulation, Transmitted_Phase contrast (Zernicke), Transmitted_Polarization, Transmitted_Oblique illumination, Transmitted_Varel contrast, Wide-field_Fluorescence, Widefield_Fluorescence_FLIM (Fluorescence Lifetime Imaging), Widefield_Fluorescence_FLIP (Fluorescence Loss in Photobleaching), Widefield_Fluorescence_FRAP (Fluorescence Recovery After Photobleaching), Widefield_Fluorescence_FRET (Förster Resonance Energy Transfer), Widefield_Fluorescence_SPIM (Selective or Single Plane Illumination Microscopy), Widefield_Fluorescence_TIRF (Total Internal Reflection Fluorescence), Other