WU-BIMAC / MicroMetaApp-React

This is the React implementation of Micro-Meta App, Microscopy Metadata for the real world!
https://wu-bimac.github.io/MicroMetaApp.github.io/
GNU General Public License v3.0
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[NEW FEATURE] MANAGE INSTRUMENT/SETTINGS --> Suggestion for default text and a naming convention #424

Open JSDLacoste opened 2 years ago

JSDLacoste commented 2 years ago

When having to manage dozens of different microscopes, it is handy to have a unified way of identifying the individual system and their various components. This is a suggestion for a default text naming for a microscopy system. TBD stands for "To Be Determined": Microscope name: Institution_Site_roomTBD_microscopyType_serialNumberOfTheStandTBD Microscopy type examples: transmitted light (TL), wide-field fluorescence (WFM), LSM, SD, TIRF, STED, etc.

As for specific components, the fluorescence cubes and their components vary a lot in my own experience. This is a suggestion for a default text naming for them: Cube: “WFM green” Excitation filter: “WFM 470/40x” Dichroic: “WFM 495bs” Emission filter: “WFM 525/50m”

strambc commented 2 years ago

Thank you!


Caterina Strambio De Castillia, Ph.D. | Chan Zuckerberg Initiative Imaging Scientist | Assistant Professor, Program in Molecular Medicine | The University of Massachusetts Medical School | 373 Plantation Street, Biotech II, Suite 114 Worcester, MA 01605, USA |

From: JSDLacoste @.> Reply-To: WU-BIMAC/MicroMetaApp-React @.> Date: Monday, November 29, 2021 at 13:10 To: WU-BIMAC/MicroMetaApp-React @.> Cc: Subscribed @.> Subject: [WU-BIMAC/MicroMetaApp-React] [NEW FEATURE] MANAGE INSTRUMENT/SETTINGS --> Suggestion for default text and a naming convention (Issue #424)

When having to manage dozens of different microscopes, it is handy to have a unified way of identifying the individual system and their various components. This is a suggestion for a default text naming for a microscopy system. TBD stands for "To Be Determined": Microscope name: Institution_Site_roomTBD_microscopyType_serialNumberOfTheStandTBD Microscopy type examples: transmitted light (TL), wide-field fluorescence (WFM), LSM, SD, TIRF, STED, etc.

As for specific components, the fluorescence cubes and their components vary a lot in my own experience. This is a suggestion for a default text naming for them: Cube: “WFM green” Excitation filter: “WFM 470/40x” Dichroic: “WFM 495bs” Emission filter: “WFM 525/50m”

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strambc commented 2 years ago

To be discussed with QUAREP and BINA WG Once the naming convention is adopted, it is possible that MMA could implement it automatically

Addressed on Trello https://trello.com/c/SiyAejth