problem with build_graph.py

WangHYLab / fcirc

a python pipeline for linear and circular RNAs of known fusions exploration

MIT License

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problem with build_graph.py #3

Closed LoeliaBabin closed 2 years ago

LoeliaBabin commented 3 years ago

I encounter problem when runnin build_graph.py I have this message : Failed to build the bipartite graph pairs I used Homo_sapiens.GRCh38.dna.primary_assembly.fa for genome and Homo_sapiens.GRCh38.90.gtf for gtf (I changed the - by -- in the first column of fusion_table.tsv) Could you help me to solve this problem ?

zhixue commented 2 years ago

Hi.
We have fixed this problem, please re-download codes again. "--" is used to connect fusion gene pairs instead of "-".

Thank you for your report.