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WangJL2021 / scPolyA-seq

https://pubmed.ncbi.nlm.nih.gov/36454750/
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Dataset (separate file) #3

Open WangJL2021 opened 1 year ago

WangJL2021 commented 1 year ago

datasets.zip in .xlsx format, with the following 6 datasets:

Dataset S1 (separate file). Spearman correlation between gDPAU and gene expression.

Dataset S2 (separate file). Significantly differential expressed genes between unsynchronized HeLa and synchronized HeLa by DESeq2.

Dataset S3 (separate file). PolyA site usage switched genes between synchronized HeLa and unsynchronized HeLa.

Dataset S4 (separate file). Cell cycle associated genes used to infer cell cycle phase in MDA-MB-468 cell line.

Dataset S5 (separate file). Genes showing polyA site usage switches between neighboring cell cycle phases in MDA-MB-468 can be grouped into six gene clusters.

Dataset S6 (separate file). The six gene clusters inferred using correlation of average gDPAU of each gene across five cell phases in MDA-MB-468 cells.

WangJL2021 commented 6 months ago

The excel file used to upload raw Read 2 to GEO: seq_template.xlsx

Result: https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE178264