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WangJin93 / TFTF

Transcription Factor Target Finder (TFTF) is an R package designed for predicting transcription factor target genes and predicting upstream transcription factors of target genes.
https://jingle.shinyapps.io/TF_Target_Finder/
MIT License
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pantissue_cor_analysis() 报错 #2

Open 234pk opened 4 months ago

234pk commented 4 months ago

cor_results <- pantissue_cor_analysis(

  • Gene1 = "FOXM1",
  • Gene2 = "GAPDH",
  • data_source = "TCGA",
  • type = c("normal", "tumor"),
  • cor_method = "pearson"
  • ) Try querying data #1 Try querying data #2 Try querying data #3 Try querying data #4 Try querying data #5 value[3L]里有警告: Tried 5 times but failed, please check URL or your internet connection or try it later! Saving data to file C:\Users\16500\AppData\Local\Temp\RtmpcnUBYa/UCSCXenaShiny/fedbfbc601ea0cf5ac21ac82c7d60ace.rds More info about dataset please run following commands: library(UCSCXenaTools) XenaGenerate(subset = XenaDatasets == "TcgaTargetGtex_rsem_gene_tpm") %>% XenaBrowse() Try querying data #1 Try querying data #2 Try querying data #3 Try querying data #4 Try querying data #5 value[3L]里有警告: Tried 5 times but failed, please check URL or your internet connection or try it later! Saving data to file C:\Users\16500\AppData\Local\Temp\RtmpcnUBYa/UCSCXenaShiny/d9176c28fb9ffa98c9be92da1d421e3e.rds More info about dataset please run following commands: library(UCSCXenaTools) XenaGenerate(subset = XenaDatasets == "TcgaTargetGtex_rsem_gene_tpm") %>% XenaBrowse() No results were returned, your inputed TF, FOXM1, does not have valid data in the TCGA database.
WangJin93 commented 4 months ago

It seems like the error is that the UCSCXenaTools package is unable to connect to the database to download data. I just tried the code and it worked for me. Please try again, and consider changing your network if the issue persists.

AcetylCoALab commented 2 months ago

i have same tissue ，do you solve the tissue?