Add the outdir param - Githubissues

WangLab-ComputationalBiology / btc-scrna-pipeline

A Nextflow pipeline for single-cell RNA-Seq dataset

MIT License

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Add the outdir param #6

Closed sminot closed 1 year ago

sminot commented 1 year ago

I noticed in the logs that the workflow was expecting the outdir param, and so I added it to the preprocess script.

I also modified the behavior with the genome parameter slightly so that it is always initialized, even in the case when it is set to False and a custom genome is being used.