Open Cai-98 opened 1 year ago
Hi Thank you for your interest in our study. Have you solved the problem yet , which scGCO version did you run ?
Best wishes Wanwan
Hi Thank you for your interest in our study. Have you solved the problem yet , which scGCO version did you run ?
Best wishes Wanwan
I have no idea of how to solve the problem. BTW, the code works well on demo data in Windows but not in Linux.
scGCO version is 1.1.2.
I guess that the problem was caused by the skimage.filters.threshold_otsu. If possible, you run it on the tiny sampling dataset or sent the tiny dataset to me? For the problem in Linux, this is caused by too many cores of running the code.
I've sent you a tiny dataset.
While using scGCO, encountered the following error
code is running in Python 3.9
Traceback :
Other warnings when running preprocess steps
And another error is multi-threading doesn't work on my linux server, as mentioned in #2 .