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WangPeng-Lab / scGCO

Single-cell Graph Cuts Optimization
MIT License
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Creating undirected graph #4

Closed carissaynchen closed 1 year ago

carissaynchen commented 1 year ago

Hello,

I'm not sure what objects should be supplied to create the cellGraph variable. In the tutorial, if I understand correctly, the locs object should also contain the x-y coordinates, and only the first gene is supplied in the exp object -

exp= data_norm.iloc[:,0] cellGraph= create_graph_with_weight(locs, exp)

Is the case for any dataset I supply?

Thank you!

fengwanwan commented 1 year ago

Hi, Thanks for your interest in scGCO, you can create the cellGraph using the 2-D array locations (locs) and the same row length 1-D array exp.