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WangPeng-Lab / scGCO

Single-cell Graph Cuts Optimization
MIT License
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Query about the Simulated Dataset of 7 Artificial Patterns #5

Open Yecats77 opened 1 year ago

Yecats77 commented 1 year ago

Under the directory scGCO/code/analysis/Simulation/notebooks, the script run_scGCO_sim_mob.py is using the mouse MOB Replicate 11 data to generate your simulated datasets. It seems like you use this real mouse data to generate both 7 artificial patterns and 3 authentic biological patterns.

May I ask where I can find the simulated datasets of 7 artificial patterns, or how I can define and generate them by myself? I want to reproduce these patterns and further testing on them.

Thank you!

fengwanwan commented 1 year ago

Thanks for your interest in scGCO, I will send it to your email.

Best wishes Wanwan