JacobJoseph-gu
commented
7 years ago Will track progress by editing this comment:
- ImageJ java website https://imagej.nih.gov/ij/docs/intro.html
- our .img do no convert with same settings as .bin
- .img are read into felix using the following:
OPEN(UNIT= IChInImage, STATUS= 'UNKNOWN', FILE=TRIM(ADJUSTL(filename)), & FORM='UNFORMATTED',ACCESS='DIRECT',IOSTAT=IErr,RECL=2*IPixelCount*IByteSize) ... DO jnd=1,2*IPixelCount READ(IChInImage,rec=jnd,IOSTAT=IErr) RImageExpi(jnd,:,ind) ! ind = 1,INoOfLacbedPatterns - .bin writen out using the following:
OPEN(UNIT=IChOutWIImage, STATUS= 'UNKNOWN', FILE=TRIM(ADJUSTL(filename)),& FORM='UNFORMATTED',ACCESS='DIRECT',IOSTAT=IErr,RECL=2*IPixelCount*8) IF(l_alert(IErr,"WriteIterationOutput","OPEN() output .bin file")) RETURN DO jnd = 1,2*IPixelCount WRITE(IChOutWIImage,rec=jnd) RImageToWrite(jnd,:) - comparing GaAs_+0+0+0 input .img and output .bin with hexdump...
jacob@jacob-VirtualBox:~/a$ hexdump -n 50 input.img 0000000 0000 0000 9500 40ba 0000 0000 9e80 40c2 0000010 0000 0000 0e80 40cd 0000 0000 de80 40db ... jacob@jacob-VirtualBox:~/a$ hexdump -n 50 output.bin 0000000 4143 0aa4 27a7 3fd4 53ce 42ba a9d6 3fda 0000010 9deb 047c 11a6 3fe2 2b3e 3a36 109c 3fe7 ... - conisder different record length and output .img immediately as .bin to compare
- Image J simple exercise, install, use java etc.
- Image J macro scripting
- Image J from fortran, compiling, calling java / programs from fortran in general
- image J batch convert https://imagej.nih.gov/ij/macros/BatchConvert.txt
update Felix to read .tif and .dm3 (DigitalMicrograph) files. There are C++ plugins for .tif and a JavaScript for .dm3, they could be useful to convert to Fortran. Also, rejig the input .img and output .bin files into a joint format.