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Washington-University / HCPpipelines

Processing pipelines for the HCP
https://www.humanconnectome.org/
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Where does real_bias file get created? #115

Open mharms opened 5 years ago

mharms commented 5 years ago

https://github.com/Washington-University/HCPpipelines/blob/1f89abcacbb97e6369f1aeb454cd411ebe8921a8/RestingStateStats/RestingStateStats.sh#L949

Is the "real_bias" file created by any of the script currently in the repo?

glasserm commented 5 years ago

No this file is only relevant for HCP-YA data with a legacy bias correction that requires updating to a new bias correction.

mharms commented 5 years ago

But how did that file get created? i.e., what if someone else used the "legacy" bias correction and wanted to update ?

glasserm commented 5 years ago

Perhaps that code should get committed. I am in the process of running it all on the HCP-YA data...

glasserm commented 5 years ago

Lets hold off on committing until Tim's rewrite of weighted regression is closer to completion so that we know if any changes are needed.