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Washington-University / NHPPipelines

Enhancements of HCP Pipelines for non-human primates
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wmskeleton.nii.gz for Marmosets #11

Open ajallenunc opened 9 months ago

ajallenunc commented 9 months ago

Hello @takuya-hayashi,

I hope this message finds you well. I am currently engaged in a project involving the analysis of Marmoset data and came across a similar problem as reported in a previous issue #5 . It appears that I am missing the file MarmosetRIKEN/wmskeleton.nii.gz, which is needed in

https://github.com/Washington-University/NHPPipelines/blob/cb237b1b5b01e4bdf764f6615ea7e0a0c2c2bea9/FreeSurfer/FreeSurferPipelineNHP.sh#L312-L319

Would it be possible for you to add this file to the repository? Alternatively, if the file is available elsewhere, could you kindly direct me to the appropriate source?

Thanks

takuya-hayashi commented 9 months ago

Hi Adrian, Sorry for not inlucding this file in this version of the pipelne. We are now working on the new version of the NHP-HCP pipeline. Attached is the latest version of the marmoset wmskeleton MarmosetRIKEN20_Averagewmskeleton.nii.gz , which can be used in combinnation with MarmosetRIKEN20 templates: https://balsa.wustl.edu/study/p005n