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WatsonLab / KOunt

Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.
GNU General Public License v3.0
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Installation issue #5

Closed LorrieMacc closed 7 months ago

LorrieMacc commented 1 year ago

Hi Jennifer,

Thank you very much for creating this new tool :) I have just installed KOunt following the instructions but ran into a problem while running the test run.

I think the issue is at step 6 : Missing output files: out/Abundance_Outputs/ERR2027889_005/ERR2027889_005_coverage; Input files updated by another job: out/Prodigal_Outputs/filtered_gffs/ERR2027889_005/ERR2027889_005.gff, scripts/BamDeal-0.24/bin/BamDeal_Linux, out/Abundance/ERR2027889_005/ERR2027889_005_bwa

Could you please help me to solve this problem ? I am also attaching the log and err KOunt_Install_err.txt KOunt_Install_log.txt

Thank you very much in advance lorrie

jmattock5 commented 1 year ago

Hi Lorrie,

Thanks for your feedback! From your log files it looks like the issue is that the scripts haven't been made executable. Please can you try the following and let me know if you still have issues? chmod +x scripts/*sh

Thanks, Jenny