Recommended hardware requirements

WatsonLab / MAGpy

Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)

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Recommended hardware requirements #10

Closed slambrechts closed 4 years ago

slambrechts commented 5 years ago

Hi there,

MAGpy seems like an interesting tool I would like to use, but I was wondering if you could add any information regarding system requirements? I understand resource requirements for this pipeline will vary greatly based on the amount of data being processed, but can you recommend a minimum and ideal amount of cores, RAM and storage space to succesfully run MAGpy on (for example) 100 MAGs?

Best regards,

Sam

mw55309 commented 4 years ago

If you look in MAGpy.json it should suggest a few of the resource requirements needed for each task