error while running pfam

[shashankx]

Hi, I got en error while running the MAGpy on mags.

**[Mon Nov 18 12:52:21 2019] Finished job 109. 173 of 373 steps (46%) done Activating conda environment: /mibi/users/jsb562/MAGpy/.snakemake/conda/b0d3265a FATAL: can't find "active_site.dat" in "/mibi/users/jsb562/MAGpy/pfam" at /mibi/users/jsb562/MAGpy/.snakemake/conda/b0d3265a/share/pfam_scan-1.6-3/pfam_scan.pl line 92. [Mon Nov 18 12:52:25 2019] Error in rule pfam_scan: jobid: 36 output: pfam/18097D-02-03_bin.6.pfam conda-env: /mibi/users/jsb562/MAGpy/.snakemake/conda/b0d3265a shell: pfam_scan.pl -outfile pfam/18097D-02-03_bin.6.pfam -as -cpu 8 -fasta proteins/18097D-02-03_bin.6.faa -dir /mibi/users/jsb562/MAGpy/pfam (one of the commands exited with non-zero exit code; note that snakemake uses bash strict mode!)

found less than 4.0 kbp in common. => exiting [Mon Nov 18 12:52:30 2019] Finished job 116. 174 of 373 steps (47%) done found less than 4.0 kbp in common. => exiting [Mon Nov 18 12:52:32 2019] Finished job 100. [Mon Nov 18 12:53:07 2019] Finished job 118. 183 of 373 steps (49%) done Shutting down, this might take some time. Exiting because a job execution failed. Look above for error message Complete log: /mibi/users/jsb562/MAGpy/.snakemake/log/2019-11-18T123925.474123.snakemake.log**

Any suggestions?

[mw55309]

Hi

is "active_site.dat" in "/mibi/users/jsb562/MAGpy/pfam ??

Cheers Mick

[shashankx]

Yeah, got it.. thank you