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WatsonLab / MAGpy

Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)

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Exiting because a job execution failed. Look above for error message #30

Closed zhibaosuo closed 3 years ago

zhibaosuo commented 3 years ago

Hi, I try to run the MAGpy using my own binning genomes, but the error occurs, and I cannot see the reason from the snakemake.log. Here is the log file, can you please help me to see the cause of the error? Thank you! 2021-05-24T184256.022975.snakemake.log

mw55309 commented 3 years ago

Two errors occurred

FIrtsly in PhyloPhlan, this is nor surprise as the phylophlan functionality is broken - I am sorry! See https://github.com/WatsonLab/MAGpy/issues/29#issuecomment-778589844 for how to fix that.

The second job was checkm_plus

It may be that this is simply because you need to run:

chmod 755 scripts/*

Can you try that and get back to me?

mw55309 commented 3 years ago

Hey

There is a new release today that fixes a lot of sourmash and phylophlan bugs

Please test it!

Cheers Mick

zhibaosuo commented 3 years ago

Thank you, I tried the way you taught me and it worked. I will try the new release.