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WatsonLab / MAGpy

Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)
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WARNING: the sourmash compute command is DEPRECATED as of 4.0 and will be removed in 5.0. #40

Closed LiuYajing0914 closed 2 years ago

LiuYajing0914 commented 2 years ago

Hi,Dear Sir！ I had some questions when I used this pipeline.The Sourmash's Options seem to something wrong! First question,the sourmash is useful,but the "test_results.txt" is print "Sourmash ran with some errors: == This is sourmash version 4.1.1. == == Please cite Brown and Irber (2016), doi:10.21105/joss.00027. ==" why? Next question,when I used "snakemake -rp -s MAGpy --use-conda all --cores 16"，the log file was found this： “ WARNING: the sourmash compute command is DEPRECATED as of 4.0 and will be removed in 5.0. Please see the 'sourmash sketch' command instead.” I don't know my results are correct or not? Thanks!

mw55309 commented 2 years ago

I think this is OK, we can continue to use sourmash 4 for the time being :)

LiuYajing0914 commented 2 years ago

Ok,i got it,thank you!😁