search

WatsonLab / MAGpy

Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)
62 stars 23 forks source link

Error in Run tests and install conda envs #43

Open xiaochen2015 opened 2 years ago

xiaochen2015 commented 2 years ago

Hi, I tried to run the new version of MAGpy, and I got an error in running tests and install conda envs (forward step "conda env create -f envs/install.yaml" was corrected).

❯ snakemake -rp -s MAGpy --cores 1 --use-conda test Building DAG of jobs... Creating conda environment envs/checkm.yaml... Downloading and installing remote packages. CreateCondaEnvironmentException: Could not create conda environment from /home/t640/user/xiaochen/software/MAGpy/envs/checkm.yaml:

>>>>>>>>>>>>>>>>>>>>>> ERROR REPORT <<<<<<<<<<<<<<<<<<<<<<

Traceback (most recent call last):
  File "/home/t640/user/xiaochen/miniconda3/envs/magpy_install/lib/python3.10/site-packages/conda/exceptions.py", line 1080, in __call__
    return func(*args, **kwargs)
  File "/home/t640/user/xiaochen/miniconda3/envs/magpy_install/lib/python3.10/site-packages/conda_env/cli/main.py", line 80, in do_call
    exit_code = getattr(module, func_name)(args, parser)
  File "/home/t640/user/xiaochen/miniconda3/envs/magpy_install/lib/python3.10/site-packages/conda_env/cli/main_create.py", line 141, in execute
    result[installer_type] = installer.install(prefix, pkg_specs, args, env)
  File "/home/t640/user/xiaochen/miniconda3/envs/magpy_install/lib/python3.10/site-packages/mamba/mamba_env.py", line 45, in mamba_install
    index = load_channels(pool, channel_urls, repos, prepend=False)
  File "/home/t640/user/xiaochen/miniconda3/envs/magpy_install/lib/python3.10/site-packages/mamba/utils.py", line 122, in load_channels
    index = get_index(
  File "/home/t640/user/xiaochen/miniconda3/envs/magpy_install/lib/python3.10/site-packages/mamba/utils.py", line 103, in get_index
    is_downloaded = dlist.download(True)
RuntimeError: Multi-download failed.

$ /home/t640/user/xiaochen/miniconda3/envs/magpy_install/bin/mamba create --quiet --file /home/t640/user/xiaochen/software/MAGpy/.snakemake/conda/80bd1d816c0e92c259e9c740d841735f.yaml --prefix /home/t640/user/xiaochen/software/MAGpy/.snakemake/conda/80bd1d816c0e92c259e9c740d841735f

How can I solve this problem? Thank you!

mw55309 commented 1 year ago

Sorry, please pull the latest repo and see f that solves things?