WatsonLab / MAGpy

Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)
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building Database #49

Open PabloArrow opened 11 months ago

PabloArrow commented 11 months ago

Build the databases

This will build a DIAMOND database of the whole of UniProt TREMBL, so you will need to give it a lot of resources (RAM) - try 256Gb.

rm -rf magpy_dbs snakemake -rp -s MAGpy --cores 16 --use-conda setup

Is it possible to download Diamond databases from Uniprot considering the high resources needed to build it locally?