MAGpy/envs/install.yaml is missing!!

WatsonLab / MAGpy

Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)

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MAGpy/envs/install.yaml is missing!! #6

Closed yoobios closed 5 years ago

yoobios commented 5 years ago

According to install.md (https://github.com/WatsonLab/MAGpy/blob/master/install.md), in step 5 create the main MAGpy environment: conda env create -f MAGpy/envs/install.yaml

But the install.yaml is missing. So I got this error warning. SpecNotFound: Can't process without a name.

Thank you

yoobios commented 5 years ago

Can I just install other .yaml files (eg. sourmash.yaml, ete3.yaml) directly to any conda environment I already have? eg. conda env update --name=myenvs --file MAGpy/envs/sourmash.yaml

mw55309 commented 5 years ago

Apologies, install.yaml had been committed but not pushed - it is there now.

You can't install everything into a single env as some are python 3 and some are python 2

We used to have single, larger envs but they were taking 7 hours for conda to resolve - not good.