WatsonLab / PULpy

Open prediction of Polysaccharide Utilisation Loci (PUL)
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No "snakemake" in environment of PULpy #5

Closed youngDouble closed 4 years ago

youngDouble commented 4 years ago

I can't execute cmd: "snakemake --use-conda" because the command was not found, and I noticed that there is no executable file snakemake in git and conda environments; is it the Snakefile? I can't understand the content format of the Snakefile, it doesn't look like a shell script? What is the format? Looking forward to your answer! I would be grateful if you could send the answer to my email : _yangzschi@yeah.net Sorry, I made a stupid question, now I have solved it.

mw55309 commented 4 years ago

Ah my apologies, you will need to install snakemake

https://snakemake.readthedocs.io/en/stable/

I recommend doing this via conda

youngDouble commented 4 years ago

Thank you for your reply, I have realized this reason and solved the problem. Thank you again for your answers!

yangzs

杨志双 yangzs_chi@yeah.net Sichuan Agricultural University, Chengdu, Sichuan, China

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在 2019-08-09 19:43:03,"Mick Watson" notifications@github.com 写道:

Ah my apologies, you will need to install snakemake

https://snakemake.readthedocs.io/en/stable/

I recommend doing this via conda

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