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WayScience / CytoSnake

Orchestrating high-dimensional cell morphology data processing pipelines
https://cytosnake.readthedocs.io
Creative Commons Attribution 4.0 International
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Renaming `CytoPipe` to `CytoSnake` #19

Closed axiomcura closed 2 years ago

axiomcura commented 2 years ago

This PR address the renaming of CytoPipe to CytoSnake.

Effects from rename

Program will be now executed by typing cytosnake instead of cytopipe. For example:

Before change 

cytopipe init -d *sqlite -m metadata -b barcodes.txt

After renaming:

cytosnake init -d *sqlite -m metadata -b barcodes.txt

cytosnake specific modules paths have also been changed:

before renaming

from cytopipe.cli.cli_docs import run_doc

After renaming

from cytosnake.cli.cli_docs import run_doc

The documentation has also been updated with the replacement with cytopipe to cytosnake.