This PR adds image masks for NF1 test data using a cppipe CellProfiler file provided by @jenna-tomkinson and existing test data sampled from Plate 2. The focus here is solely on adding test data and tracking provenance through the pipefile and a Docker-based processing of the image files into masks.
References #33 (adds data needed to accomplish this work)
Thanks for any feedback you may have!
What kind of change(s) are included?
[ ] Feature (adds or updates new capabilities)
[ ] Bug fix (fixes an issue).
[x] Enhancement (adds functionality).
[ ] Breaking change (these changes would cause existing functionality to not work as expected).
Checklist
Please ensure that all boxes are checked before indicating that this pull request is ready for review.
[x] I have read and followed the CONTRIBUTING.md guidelines.
[x] I have searched for existing content to ensure this is not a duplicate.
[x] I have performed a self-review of these additions (including spelling, grammar, and related).
[x] These changes pass all pre-commit checks.
[x] I have added comments to my code to help provide understanding
[ ] I have added a test which covers the code changes found within this PR
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Description
This PR adds image masks for NF1 test data using a
cppipe
CellProfiler file provided by @jenna-tomkinson and existing test data sampled from Plate 2. The focus here is solely on adding test data and tracking provenance through the pipefile and a Docker-based processing of the image files into masks.References #33 (adds data needed to accomplish this work)
Thanks for any feedback you may have!
What kind of change(s) are included?
Checklist
Please ensure that all boxes are checked before indicating that this pull request is ready for review.