WayScience / coSMicQC

Single cell Morphology Quality Control (coSMicQC)
https://wayscience.github.io/coSMicQC/
BSD 3-Clause "New" or "Revised" License
7 stars 3 forks source link

Create image masks for NF1 test data #56

Closed d33bs closed 4 months ago

d33bs commented 4 months ago

Description

This PR adds image masks for NF1 test data using a cppipe CellProfiler file provided by @jenna-tomkinson and existing test data sampled from Plate 2. The focus here is solely on adding test data and tracking provenance through the pipefile and a Docker-based processing of the image files into masks.

References #33 (adds data needed to accomplish this work)

Thanks for any feedback you may have!

What kind of change(s) are included?

Checklist

Please ensure that all boxes are checked before indicating that this pull request is ready for review.

d33bs commented 4 months ago

Thanks @jenna-tomkinson ! Merging this in.