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WayScience / phenotypic_profiling

Machine learning for predicting 15 single-cell phenotypes from cell morphology profiles
Creative Commons Attribution 4.0 International
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Save interpretations #12

Closed roshankern closed 1 year ago

roshankern commented 1 year ago

This PR is ready for review!

In this PR, model coefficients are saved for the final and shuffled baseline models. These coefficients are saved in the tidy long standardized data format.

roshankern commented 1 year ago

In response to @gwaybio,

Suggestions 1 and 2 have been implemented in bc1bf11. Regarding suggestion 3, I don't think its worth specifying that these features are from DeepProfiler, as so far everything in the repository is DP. Once the final changes are done for this repo, I will make a repo version for multi-class model - DP and the next version will be something like single-class models CP and DP.