WayScience / phenotypic_profiling

Machine learning for predicting 15 single-cell phenotypes from cell morphology profiles
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Get model predictions #14

Closed roshankern closed 1 year ago

roshankern commented 1 year ago

This PR is ready for review!

This is the last PR to restructure the 3.evaluate_model module. In this PR, a notebook is made to get and compile the predictions for each model and dataset combination. These predictions are saved in a .tsv intermediate file.

Also, the unused evaluate_module.ipynb notebook and its associated utils have been removed, as this code has been redistributed into many notebooks.

class_PR_curves.py also has slight changes as the edited notebook must have not been reconverted during the PR it was created in, my bad!