Adding CP features to ggplot visualization

[gwaybio]

Also adding CP+DP features and the F1 score notebook

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[gwaybio]

Results summary

Feature space	Number of top scoring phenotypes
CP_and_DPtest	10
CPtest	4
DPtest	2

F1 Score results

PR Curve results

[gwaybio]

@roshankern - I also had a question: what is Weighted? Should I include this class in the F1 score bar chart?

[roshankern]

@roshankern - I also had a question: what is Weighted? Should I include this class in the F1 score bar chart?

Weighted refers to the weighted F1 score (the mean F1 score that takes into account occurrences of each label). I think this is good to include as it gives an idea of the overall performance of the model.

[roshankern]

Another small comment: consider changing the final pr curve figure to 3 rows x 5 comments instead of 4x4 format. I think this would look better for a final figure, especially since there are 15 models. This is nitpicky, so feel free to ignore.

[roshankern]

There might be something to address in this PR now that the threshold values changed for multiclass models in #26.

[gwaybio]

Another small comment: consider changing the final pr curve figure to 3 rows x 5 comments instead of 4x4 format. I think this would look better for a final figure, especially since there are 15 models. This is nitpicky, so feel free to ignore.

This is a very good suggestion.

I've also implemented all other suggestions, I am going to merge!

[gwaybio]

Weighted refers to the weighted F1 score (the mean F1 score that takes into account occurrences of each label). I think this is good to include as it gives an idea of the overall performance of the model.

One last thing - i changed this label to increase clarity