WayScience / phenotypic_profiling

Machine learning for predicting 15 single-cell phenotypes from cell morphology profiles
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Get SCM Predictions and LOIO Probabilities #28

Closed roshankern closed 1 year ago

roshankern commented 1 year ago

This PR is ready for review!

In this PR, predictions and leave-one-image-out probabilities are derived for the single-class models.

For predictions, we simply load in the model for a particular phenotypic class, model type (final or shuffled baseline), and feature type (CP, DP, CP_and_DP) then derive model predictions for cells from both data subsets (train and test). Predictions are saved to predictions/.

The LOIO evaluation procedure is as follows:

The probabilities are saved to LOIO_probas/.

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roshankern commented 1 year ago

Merging into wrong branch.