search

WayScience / phenotypic_profiling

Machine learning for predicting 15 single-cell phenotypes from cell morphology profiles
Creative Commons Attribution 4.0 International
2 stars 3 forks source link

Add F1 scores notebook #9

Closed roshankern closed 1 year ago

roshankern commented 1 year ago

This is ready for review!

This PR is the second of many to restructure the evaluate model module and output the evaluations in tidy long format for later figure generation.

In this PR, a separate notebook is created to display the f1 scores for the final and shuffled baseline models' predictions for the train and test datasets. These f1 scores are converted to tidy long format and saved.

roshankern commented 1 year ago

After @gwaybio's comment above, I have also compiled all confusion matrix data into one .tsv file. Sorry for the added changes in this PR 😞