Feature selection of half runs results in different features selected for the same cells across different treatments

WayScience / pyroptosis_signature_image_profiling

This repository contains the pipelines used to analyze the data sets from the Interstellar collaboration.

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Feature selection of half runs results in different features selected for the same cells across different treatments #28

Closed MikeLippincott closed 1 year ago

MikeLippincott commented 1 year ago

We need to merge the first and second runs, re-run fs and normalization then we can proceed. I can fork and open a PR for the parquet file merges. Cheers!

jenna-tomkinson commented 1 year ago

Interesting!

Please make sure to perform the merge in the 4.processing_features module for Plate 2. In the future, this might be removed if we can use the cluster to rerun the SHSY5Y cells in full.

jenna-tomkinson commented 1 year ago

This was completed in PR #29. This issue can be closed now.