Extract image features from SHSY5Y runs

WayScience / pyroptosis_signature_image_profiling

This repository contains the pipelines used to analyze the data sets from the Interstellar collaboration.

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Extract image features from SHSY5Y runs #30

Closed jenna-tomkinson closed 1 year ago

jenna-tomkinson commented 1 year ago

In this PR, I extract image features from the CellProfiler SQLite output into its own parquet file. I also edit the documentation in the README and add this extraction into the "pipeline" of processing the CP features.

Note: I do not normalize or feature select any of this data.

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jenna-tomkinson commented 1 year ago

@MikeLippincott Thank you for the review! I will now be merging!