search

Wedge-lab / dpclust

Dirichlet Process based methods for subclonal reconstruction of tumours
GNU Affero General Public License v3.0
28 stars 16 forks source link

out of bounds #8

Open SwaggerNiels opened 4 years ago

SwaggerNiels commented 4 years ago

I have many succesfull runs with output:

[1] "Estimating density confidence intervals..."
[1] "1000 / 5041"
[1] "2000 / 5041"
[1] "3000 / 5041"
[1] "4000 / 5041"
[1] "5000 / 5041"
[1] "Writing out final output..."
[1] "Done."

but still, I'm getting the error:

[1] "Estimating density confidence intervals..."
[1] "100 / 1681"
[1] "200 / 1681"
[1] "300 / 1681"
[1] "400 / 1681"
[1] "500 / 1681"
[1] "600 / 1681"
[1] "700 / 1681"
[1] "800 / 1681"
[1] "900 / 1681"
[1] "1000 / 1681"
[1] "1100 / 1681"
[1] "1200 / 1681"
[1] "1300 / 1681"
[1] "1400 / 1681"
[1] "1500 / 1681"
[1] "1600 / 1681"
Error in localOptima[1, ] : subscript out of bounds
Calls: RunDP ... DirichletProcessClustering -> multiDimensionalClustering

randomly. I run for 2 samples with low number of iterations, what does this mean? Any idea how to overcome it?

Avramis commented 1 year ago

Hi @SwaggerNiels. Could you provide more details so we can replicate the issue? If you have any of the outputs of dpclust pipeline would be really usueful.