Open fryzjergda opened 7 months ago
Hi, I was having trouble with running the fpocketR, and narrowed down the problem to posket.run_fpocket().
the bash command there is (line 100):
bash_command = f'conda run -n fpocketR fpocket -f {pdb} -k {chain} -l {state} -m {m} -M {M} -i {i} -D {D} -A {A} -p {p} -w p'
In my case the program was unable to invoke conda, so I had to explicitly give it a path to my conda executable:
conda_executable = "/home/user/miniconda3/bin/conda" bash_command = f'{conda_executable} run -n fpocketR fpocket -f {pdb} -k {chain} -l {state} -m {m} -M {M} -i {i} -D {D} -A {A} -p {p} -w p'
I don't know if this was specific to my case, but wanted to let you know about the potential bug.
Best, Tomasz
I haven't found a better way to implement the fpocket subprocess yet, hopefully, this isn't a widespread issue. Thanks
Hi, I was having trouble with running the fpocketR, and narrowed down the problem to posket.run_fpocket().
the bash command there is (line 100):
In my case the program was unable to invoke conda, so I had to explicitly give it a path to my conda executable:
I don't know if this was specific to my case, but wanted to let you know about the potential bug.
Best, Tomasz