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Weeks-UNC / shapemapper2

Public repository for ShapeMapper 2 releases
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Reactivity profile calculation for two samples (Modified & Untreated) #43

Closed Valentine022 closed 1 year ago

Valentine022 commented 1 year ago

Hi,

I am looking at the "Reacitvity_profile" column in the *.profiles.txt file however these values do not match the y axis of the reactivity profile plot generated. How is this calculated?

Thanks!

Psirving commented 1 year ago

The column used in the *profiles.pdf figure is "Norm_profile". Here's a link to the documentation on this: https://github.com/Weeks-UNC/shapemapper2/blob/master/docs/analysis_steps.md#reactivity-profile-calculation-and-normalization