Hi all,
I'm trying to run shapemapper for one sample with the correct-seq parameter like the following
shapemapper --name example3 --target example_data/TPP.fa --out TPP_mutant --amplicon --correct-seq --folder example_data/TPPminus --overwrite
Everything went fine until MutationParser. Can anyone help me explain what MutationParser means and its error, and what I should do with this type of error?
File "/data/user/home/nnguyen3/shape-map/shapemapper2/internals/python/pyshapemap/component.py", line 356, in format_command
raise KeyError(msg)
KeyError: "Error: for component MutationParser, 'primers' node not linked to a filename or parameter, or that node name does not exist."
Hi all, I'm trying to run shapemapper for one sample with the correct-seq parameter like the following shapemapper --name example3 --target example_data/TPP.fa --out TPP_mutant --amplicon --correct-seq --folder example_data/TPPminus --overwrite
Everything went fine until MutationParser. Can anyone help me explain what MutationParser means and its error, and what I should do with this type of error?
File "/data/user/home/nnguyen3/shape-map/shapemapper2/internals/python/pyshapemap/component.py", line 356, in format_command raise KeyError(msg) KeyError: "Error: for component MutationParser, 'primers' node not linked to a filename or parameter, or that node name does not exist."