question about breakpoints

[nihilee]

Dear author, I am confused about the large length between breakpoints of NUMTs when I read the paper and code, because searchNumtCluster_fromDiscordantReads.py and searchBreakpoint_fromblatoutputs.py should only output breakpoints within 1000bp? but actually many breakpoints in the paper Supplementary Tables with large distance even different chrom... Could you tell me where these breakpoints come from?

[WeiWei060512]

Hi, thanks for your interest of our work. We used 1000bp to cluster different NUMTs. We didn't set up any distance between two breakpoints.

Wei