Closed FL512 closed 1 year ago
Hi Ken, Thanks for reaching out. You can find the versions in our online publication.
Best, Wei
Hi Wei,
Thank you for your response.
I found most of the version info at https://static-content.springer.com/esm/art%3A10.1038%2Fs41586-022-05288-7/MediaObjects/41586_2022_5288_MOESM2_ESM.pdf Thank you!
Do you mind if ask a few more things? Which version of the perl did you use when you established the NUMTs? Are you an Ubuntu user or a CentOS user?
Happy holidays! Ken
I used perl 5. I ran my analysis on Genomics England Research Environment.
Wei
Thank you again for letting me know!! Ken
Dear Wei,
First of all, thank you very much for sharing a fantastic tools for us. We really appreciate it.
My colleague and I are interested in analyzing NUMTs using your established pipeline. It will be of great if we know which version of software you used in the pipeline. Typically, could you please let us know the version of perl and samtools (and blat if possible) used in NUMTs detection.sh?
Thank you in advance, Ken
https://github.com/WeiWei060512/NUMTs-detection/blob/master/scripts/NUMTs_detection.sh module load samblaster/0.1.24 module load samtools module load Sambamba/0.6.6