Optimize PALMER and take samtools as build-in lib.

WeichenZhou / PALMER

Pre-mAsking Long reads for Mobile Element inseRtion

MIT License

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Closed Doresimon closed 4 years ago

Doresimon commented 4 years ago

add two submodules: htslib and samtools
command view and faidx will directly be executed as part of PALMER, users do not need to install samtools
program has been tested under linux environment(ubuntu and centOS), for now we have some issue while making PALMER under OSX

WeichenZhou commented 4 years ago

This is a great update.