Part 3 feedback

[SarBen811]

Hi! Good job on your project so far. Couple of things I noticed below, but everything was present and mostly ran well! Grade = 3/3

Notes:

• Change Author name/update file names on all .qmd files
• Add subtitle or delete line in header of Manuscript
• Add header on statistical_analysis.qmd
• I wasn't able to render the Manuscript.qmd file to a word document, but I don't know why it wouldn't work (your header looks mostly the same as mine)
• In line 325 of the processing data qmd file, the analysis_data_fin object doesn't exist so the file doesn't run (this may cause issues further down the line)
• update the code folder readme.md file
• Your manuscript could use more comments in the results section since you put your figures there to explain your analysis and what you found with your models.

[irenecavros]

First of all, GREAT JOB! The figures you made were all beautiful and I only had one issue in running the actual code you wrote: Here are a few (very minor) items I picked up on:

1. Line 325 of processingfile_v1 produced an error for me. I was able to run the chunks after it without a problem but I wanted to flag this in case it has the potential to cause further errors down the line.
2. The readme file for the code folder refers to a preprocessing script, and it is referenced that way inside the body of processingfile_v1, but it may be helpful for reproducibility to either rename the processingfile_v1 or harmonize language around processing and preprocessing to avoid confusion.
3. When I tried to render the manuscript file I received the following error: “functions that produce HTML output found in document targeting docx output. Please change the output type of this document to HTML. Alternatively, you can allow HTML output in non-HTML formats by adding this option to the YAML front-matter of your quarto file: prefer-html: true.”
4. This is a very small one but I believe you still have Professor Handel as the author on some of the files so you could update that as well so that you are credited appropriately for all of the hard work you have done!

Well done, 3/3 👍

[perezkm]

Score: 3

Hi Weifan and Kailin,

Nice job!! Below are a couple notes. I think you all are well on your way to a polished product you will be proud of!

• Your initial readme file is succinct, helps orient the viewer as to where different information can be found, and also provides an order to follow.
• When I attempted to render the "processingfile_v1.qmd" I received the following error message: "Quitting from lines 325-331 (processingfile_v1.qmd) error in rename(., Location = Setting) : object 'analysis_data_fin' not found".
• Your exploratory analysis qmd is excellent and your visuals are great! I thought your "Bar Chart of Bacteria Frequency" was very interesting but the names were difficult to read. If you utilize this figure in your manucript, consider editing the names on the graph- or stagger the names as you did in the "Illness by Food Type, Excluding 'Multiple' and 'Other'" figure.
• I think your analysis is thorough and you selected relevant models given your data (e.g., Poisson for count/frequency data).
• When attempting to render your Manuscript file, I received an error- "Error: Functions that produce HTML output found in document targeting docx output. Please change the output type of this document to HTML. Alternatively, you can allow HTML output in non-HTML formats by adding this option to the YAML front-matter of your quarto file: prefer-html: true".
• One last housekeeping item, the author lister is Dr. Handel

Great work, Weifan and Kailin!! I hope this helps!