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WeiliWw / VirHostMatcher-Net

VirHostMatcher-Net: A network-based computational tool for predicting virus-host interactions.
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short-contig mode #24

Closed lingyi-owl closed 2 years ago

lingyi-owl commented 2 years ago

Hi Developer,

I want to use the --short-contig mode to predict hosts for short viral contigs but I am not sure what the criteria of short contigs are in your program. Is it based on a length cutoff? I am looking forward to your reply.

Best, Lingyi

WeiliWw commented 2 years ago

Hi Lingyi, My apologies for such a late reply! Generally you may consider using the short contig mode for contigs under 20k. For longer ones it's up to how complete you think the assembled sequences are.