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WenminWang15 / HCM_Nat-Cardiovasc-Res

Predicting the survival outcomes of HCM patient using Random Survival forests（RSF）
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Questions about downloading metabolic pathway and compound from KEGG API #1

Open mitraclip opened 2 years ago

mitraclip commented 2 years ago

Hi Wenmin! Congratulations on your fantastic work concerning metabolic profile of HCM! I am a freshman in the field of metabomics and I want to learn from your code to visualize data from LC-MS. You mention that KEGG API is a good choice for downloading data about metabolic pathway and compound. Could you share me any blog explaining how to download needed file(Hu lab.metabolites.KEGG.HMBD.xlsx, Metabolic pathway.xlsx), thanks !

WenminWang15 commented 2 years ago

May I ask which university or company you are from?

If possible we can email the file (Hu lab.metabolites.KEGG.HMBD.xlsx, Metabolic pathway.xlsx) to you.

------------------ 原始邮件 ------------------ 发件人: "WenminWang15/HCM_Nat-Cardiovasc-Res" @.>; 发送时间: 2022年5月10日(星期二) 中午12:28 @.>; @.***>; 主题: [WenminWang15/HCM_Nat-Cardiovasc-Res] Questions about downloading metabolic pathway and compound from KEGG API (Issue #1)

Hi Wenmin! Congratulations on your fantastic work concerning metabolic profile of HCM! I am a freshman in the field of metabomics and I want to learn from your code to visualize data from LC-MS. You mention that KEGG API is a good choice for downloading data about metabolic pathway and compound. Could you share me any blog explaining how to download needed file(Hu lab.metabolites.KEGG.HMBD.xlsx, Metabolic pathway.xlsx), thanks !

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you are subscribed to this thread.Message ID: @.***>

WenminWang15 commented 2 years ago

May I ask which university or company you are from?

If possible we can email the file (Hu lab.metabolites.KEGG.HMBD.xlsx, Metabolic pathway.xlsx) to you.

------------------ 原始邮件 ------------------ 发件人: "WenminWang15/HCM_Nat-Cardiovasc-Res" @.>; 发送时间: 2022年5月10日(星期二) 中午12:28 @.>; @.***>; 主题: [WenminWang15/HCM_Nat-Cardiovasc-Res] Questions about downloading metabolic pathway and compound from KEGG API (Issue #1)

Hi Wenmin! Congratulations on your fantastic work concerning metabolic profile of HCM! I am a freshman in the field of metabomics and I want to learn from your code to visualize data from LC-MS. You mention that KEGG API is a good choice for downloading data about metabolic pathway and compound. Could you share me any blog explaining how to download needed file(Hu lab.metabolites.KEGG.HMBD.xlsx, Metabolic pathway.xlsx), thanks !

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you are subscribed to this thread.Message ID: @.***>

mitraclip commented 2 years ago

May I ask which university or company you are from? If possible we can email the file (Hu lab.metabolites.KEGG.HMBD.xlsx, Metabolic pathway.xlsx) to you. … ------------------ 原始邮件 ------------------ 发件人: "WenminWang15/HCM_Nat-Cardiovasc-Res" @.>; 发送时间: 2022年5月10日(星期二) 中午12:28 @.>; @.>; 主题: [WenminWang15/HCM_Nat-Cardiovasc-Res] Questions about downloading metabolic pathway and compound from KEGG API (Issue #1) Hi Wenmin! Congratulations on your fantastic work concerning metabolic profile of HCM! I am a freshman in the field of metabomics and I want to learn from your code to visualize data from LC-MS. You mention that KEGG API is a good choice for downloading data about metabolic pathway and compound. Could you share me any blog explaining how to download needed file(Hu lab.metabolites.KEGG.HMBD.xlsx, Metabolic pathway.xlsx), thanks ! — Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you are subscribed to this thread.Message ID: @.>

Sure, I am a PhD student from Zhejiang University. My email address: chenyuxing@zju.edu.cn. Thanks for your reply!

Li-Xinqi commented 2 years ago

Hi, Wenmin! Congratulations! I'm Xinqi Li, a Ph.D. student from the Department of Automation, Tsinghua University. I'm also new to the field of metabolomics. Your work helped and inspired me a lot! I'm confused about how to prepare the files for enrichment analysis, too. Could you share the related files (Hu lab.metabolites.KEGG.HMBD.xlsx, Metabolic pathway.xlsx) with me? My email address is lxq19@mails.tsinghua.edu.cn. Thanks very much!

WenminWang15 commented 2 years ago

Thanks a lot， if it’s convenient for you, we can use wechat to communicate. My wechat ID is 13717973453.

best Wenmin

------------------ 原始邮件 ------------------ 发件人: "WenminWang15/HCM_Nat-Cardiovasc-Res" @.>; 发送时间: 2022年5月18日(星期三) 中午11:06 @.>; @.**@.>; 主题: Re: [WenminWang15/HCM_Nat-Cardiovasc-Res] Questions about downloading metabolic pathway and compound from KEGG API (Issue #1)

Hi, Wenmin! Congratulations! I'm Xinqi Li, a Ph.D. student from the Department of Automation, Tsinghua University. I'm also new to the field of metabolomics. Your work helped and inspired me a lot! I'm confused about how to prepare the files for enrichment analysis, too. Could you share the related files (Hu lab.metabolites.KEGG.HMBD.xlsx, Metabolic pathway.xlsx) with me? My email address is @.*** Thanks very much!

— Reply to this email directly, view it on GitHub, or unsubscribe. You are receiving this because you commented.Message ID: @.***>