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Example Notebooks
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Issue Running Notebooks #186

Open sanderboers48 opened 11 months ago

sanderboers48 commented 11 months ago

Hello,

I've been trying to use these notebooks, but I'm having trouble running them. Whenever I try to open one, it takes about 5 minutes to load, and then I get an error. Can anyone help me figure out what's going wrong? I've included the error logs below for reference.

Thanks for your assistance.

Requirement already satisfied: pygments>=2.4.0 in /srv/conda/envs/notebook/lib/python3.8/site-packages (from ipython==8.2.0->navabilitysdk>=0.5.0->-r requirements.txt (line 1)) (2.15.1)
Requirement already satisfied: setuptools>=18.5 in /srv/conda/envs/notebook/lib/python3.8/site-packages (from ipython==8.2.0->navabilitysdk>=0.5.0->-r requirements.txt (line 1)) (67.7.2)
Requirement already satisfied: stack-data in /srv/conda/envs/notebook/lib/python3.8/site-packages (from ipython==8.2.0->navabilitysdk>=0.5.0->-r requirements.txt (line 1)) (0.6.2)
Requirement already satisfied: traitlets>=5 in /srv/conda/envs/notebook/lib/python3.8/site-packages (from ipython==8.2.0->navabilitysdk>=0.5.0->-r requirements.txt (line 1)) (5.9.0)
Requirement already satisfied: pexpect>4.3 in /srv/conda/envs/notebook/lib/python3.8/site-packages (from ipython==8.2.0->navabilitysdk>=0.5.0->-r requirements.txt (line 1)) (4.8.0)
Requirement already satisfied: attrs>=19.2.0 in /srv/conda/envs/notebook/lib/python3.8/site-packages (from pytest==6.2.5->navabilitysdk>=0.5.0->-r requirements.txt (line 1)) (23.1.0)
Collecting iniconfig (from pytest==6.2.5->navabilitysdk>=0.5.0->-r requirements.txt (line 1))
  Downloading iniconfig-2.0.0-py3-none-any.whl (5.9 kB)
Requirement already satisfied: packaging in /srv/conda/envs/notebook/lib/python3.8/site-packages (from pytest==6.2.5->navabilitysdk>=0.5.0->-r requirements.txt (line 1)) (23.1)
Collecting pluggy<2.0,>=0.12 (from pytest==6.2.5->navabilitysdk>=0.5.0->-r requirements.txt (line 1))
  Downloading pluggy-1.3.0-py3-none-any.whl (18 kB)
Collecting py>=1.8.2 (from pytest==6.2.5->navabilitysdk>=0.5.0->-r requirements.txt (line 1))
  Downloading py-1.11.0-py2.py3-none-any.whl (98 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 98.7/98.7 kB 102.8 MB/s eta 0:00:00
Collecting toml (from pytest==6.2.5->navabilitysdk>=0.5.0->-r requirements.txt (line 1))
  Downloading toml-0.10.2-py2.py3-none-any.whl (16 kB)
Collecting chardet<5.0,>=2.0 (from aiohttp<3.8.0,>=3.7.1->gql[all]==3.0.0a6->navabilitysdk>=0.5.0->-r requirements.txt (line 1))
  Downloading chardet-4.0.0-py2.py3-none-any.whl (178 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 178.7/178.7 kB 36.0 MB/s eta 0:00:00
Collecting multidict<7.0,>=4.5 (from aiohttp<3.8.0,>=3.7.1->gql[all]==3.0.0a6->navabilitysdk>=0.5.0->-r requirements.txt (line 1))
  Downloading multidict-6.0.4-cp38-cp38-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (121 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 121.3/121.3 kB 88.4 MB/s eta 0:00:00
Collecting async-timeout<4.0,>=3.0 (from aiohttp<3.8.0,>=3.7.1->gql[all]==3.0.0a6->navabilitysdk>=0.5.0->-r requirements.txt (line 1))
  Downloading async_timeout-3.0.1-py3-none-any.whl (8.2 kB)
Requirement already satisfied: parso<0.9.0,>=0.8.0 in /srv/conda/envs/notebook/lib/python3.8/site-packages (from jedi>=0.16->ipython==8.2.0->navabilitysdk>=0.5.0->-r requirements.txt (line 1)) (0.8.3)
Requirement already satisfied: ptyprocess>=0.5 in /srv/conda/envs/notebook/lib/python3.8/site-packages (from pexpect>4.3->ipython==8.2.0->navabilitysdk>=0.5.0->-r requirements.txt (line 1)) (0.7.0)
Requirement already satisfied: wcwidth in /srv/conda/envs/notebook/lib/python3.8/site-packages (from prompt-toolkit!=3.0.0,!=3.0.1,<3.1.0,>=2.0.0->ipython==8.2.0->navabilitysdk>=0.5.0->-r requirements.txt (line 1)) (0.2.6)
Requirement already satisfied: charset-normalizer<4,>=2 in /srv/conda/envs/notebook/lib/python3.8/site-packages (from requests<3,>=2.23->gql[all]==3.0.0a6->navabilitysdk>=0.5.0->-r requirements.txt (line 1)) (3.1.0)
Requirement already satisfied: idna<4,>=2.5 in /srv/conda/envs/notebook/lib/python3.8/site-packages (from requests<3,>=2.23->gql[all]==3.0.0a6->navabilitysdk>=0.5.0->-r requirements.txt (line 1)) (3.4)
Requirement already satisfied: urllib3<3,>=1.21.1 in /srv/conda/envs/notebook/lib/python3.8/site-packages (from requests<3,>=2.23->gql[all]==3.0.0a6->navabilitysdk>=0.5.0->-r requirements.txt (line 1)) (2.0.3)
Requirement already satisfied: certifi>=2017.4.17 in /srv/conda/envs/notebook/lib/python3.8/site-packages (from requests<3,>=2.23->gql[all]==3.0.0a6->navabilitysdk>=0.5.0->-r requirements.txt (line 1)) (2023.5.7)
Requirement already satisfied: executing>=1.2.0 in /srv/conda/envs/notebook/lib/python3.8/site-packages (from stack-data->ipython==8.2.0->navabilitysdk>=0.5.0->-r requirements.txt (line 1)) (1.2.0)
Requirement already satisfied: asttokens>=2.1.0 in /srv/conda/envs/notebook/lib/python3.8/site-packages (from stack-data->ipython==8.2.0->navabilitysdk>=0.5.0->-r requirements.txt (line 1)) (2.2.1)
Requirement already satisfied: pure-eval in /srv/conda/envs/notebook/lib/python3.8/site-packages (from stack-data->ipython==8.2.0->navabilitysdk>=0.5.0->-r requirements.txt (line 1)) (0.2.2)
Requirement already satisfied: six in /srv/conda/envs/notebook/lib/python3.8/site-packages (from asttokens>=2.1.0->stack-data->ipython==8.2.0->navabilitysdk>=0.5.0->-r requirements.txt (line 1)) (1.16.0)
Building wheels for collected packages: navabilitysdk, gql
  Building wheel for navabilitysdk (setup.py): started
  Building wheel for navabilitysdk (setup.py): finished with status 'done'
  Created wheel for navabilitysdk: filename=navabilitysdk-0.6.0.post1-py3-none-any.whl size=49872 sha256=f02a55fbe70da23c5bf800372cf509f1ccb4cda340d13758c3bb67044219ba94
  Stored in directory: /tmp/pip-ephem-wheel-cache-e4oio3_z/wheels/60/ce/8a/17e2b0811f2eeef189990c7565c17a98db002d196848220b6a
  Building wheel for gql (setup.py): started
  Building wheel for gql (setup.py): finished with status 'done'
  Created wheel for gql: filename=gql-3.0.0a6-py2.py3-none-any.whl size=34863 sha256=21f4dafffe18f9865b23ec14a5e9fe856d1655ad9db4e75759698995cc95cd40
  Stored in directory: /tmp/pip-ephem-wheel-cache-e4oio3_z/wheels/df/51/64/25328dfbaa34d8bce447a3fb08175d8f2679a610a66b45857f
Successfully built navabilitysdk gql
Installing collected packages: mccabe, websockets, toml, pyflakes, pycodestyle, py, pluggy, pillow, pathspec, numpy, mypy-extensions, multidict, marshmallow, iniconfig, graphql-core, click, chardet, async-timeout, yarl, pytest, flake8, black, pytest-asyncio, ipython, gql, aiohttp, navabilitysdk
  Attempting uninstall: ipython
    Found existing installation: ipython 8.12.2
    Uninstalling ipython-8.12.2:
      Successfully uninstalled ipython-8.12.2
Successfully installed aiohttp-3.7.4.post0 async-timeout-3.0.1 black-22.3.0 chardet-4.0.0 click-8.0.2 flake8-4.0.1 gql-3.0.0a6 graphql-core-3.1.7 iniconfig-2.0.0 ipython-8.2.0 marshmallow-3.14.0 mccabe-0.6.1 multidict-6.0.4 mypy-extensions-1.0.0 navabilitysdk-0.6.0.post1 numpy-1.24.4 pathspec-0.11.2 pillow-10.0.1 pluggy-1.3.0 py-1.11.0 pycodestyle-2.8.0 pyflakes-2.4.0 pytest-6.2.5 pytest-asyncio-0.18.1 toml-0.10.2 websockets-9.1 yarl-1.9.2
Removing intermediate container c8d547bbcac9
 ---> 9f47f4f26195
Step 50/62 : USER root
 ---> Running in 0e2dedb9976c
Removing intermediate container 0e2dedb9976c
 ---> c1c3a8faaa58
Step 51/62 : COPY --chown=1000:1000 src/ ${REPO_DIR}/
 ---> b4ba31eb877d
Step 52/62 : USER ${NB_USER}
 ---> Running in 410683bd6e0f
Removing intermediate container 410683bd6e0f
 ---> fa5d82a12373
Step 53/62 : RUN JULIA_PROJECT="" julia -e "using Pkg; Pkg.add(\"IJulia\"); using IJulia; installkernel(\"Julia\", \"--project=${REPO_DIR}\");" && julia --project=${REPO_DIR} -e 'using Pkg; Pkg.instantiate(); Pkg.resolve(); pkg"precompile"'
 ---> Running in f91482c8f7b1
  Installing known registries into `/srv/julia/pkg`
    Updating registry at `/srv/julia/pkg/registries/General.toml`
   Resolving package versions...
   Installed Conda ─────────── v1.9.1
   Installed JSON ──────────── v0.21.4
   Installed JLLWrappers ───── v1.5.0
   Installed ZMQ ───────────── v1.2.2
   Installed Parsers ───────── v2.7.2
   Installed Preferences ───── v1.4.1
   Installed IJulia ────────── v1.24.2
   Installed PrecompileTools ─ v1.2.0
   Installed VersionParsing ── v1.3.0
   Installed SoftGlobalScope ─ v1.1.0
   Installed ZeroMQ_jll ────── v4.3.4+0
   Installed libsodium_jll ─── v1.0.20+0
   Installed MbedTLS ───────── v1.1.7
    Updating `/srv/julia/pkg/environments/v1.9/Project.toml`
  [7073ff75] + IJulia v1.24.2
    Updating `/srv/julia/pkg/environments/v1.9/Manifest.toml`
  [8f4d0f93] + Conda v1.9.1
  [7073ff75] + IJulia v1.24.2
  [692b3bcd] + JLLWrappers v1.5.0
  [682c06a0] + JSON v0.21.4
  [739be429] + MbedTLS v1.1.7
  [69de0a69] + Parsers v2.7.2
  [aea7be01] + PrecompileTools v1.2.0
  [21216c6a] + Preferences v1.4.1
  [b85f4697] + SoftGlobalScope v1.1.0
  [81def892] + VersionParsing v1.3.0
  [c2297ded] + ZMQ v1.2.2
  [8f1865be] + ZeroMQ_jll v4.3.4+0
  [a9144af2] + libsodium_jll v1.0.20+0
  [0dad84c5] + ArgTools v1.1.1
  [56f22d72] + Artifacts
  [2a0f44e3] + Base64
  [ade2ca70] + Dates
  [f43a241f] + Downloads v1.6.0
  [7b1f6079] + FileWatching
  [b77e0a4c] + InteractiveUtils
  [b27032c2] + LibCURL v0.6.3
  [76f85450] + LibGit2
  [8f399da3] + Libdl
  [56ddb016] + Logging
  [d6f4376e] + Markdown
  [a63ad114] + Mmap
  [ca575930] + NetworkOptions v1.2.0
  [44cfe95a] + Pkg v1.9.2
  [de0858da] + Printf
  [3fa0cd96] + REPL
  [9a3f8284] + Random
  [ea8e919c] + SHA v0.7.0
  [9e88b42a] + Serialization
  [6462fe0b] + Sockets
  [fa267f1f] + TOML v1.0.3
  [a4e569a6] + Tar v1.10.0
  [8dfed614] + Test
  [cf7118a7] + UUIDs
  [4ec0a83e] + Unicode
  [deac9b47] + LibCURL_jll v7.84.0+0
  [29816b5a] + LibSSH2_jll v1.10.2+0
  [c8ffd9c3] + MbedTLS_jll v2.28.2+0
  [14a3606d] + MozillaCACerts_jll v2022.10.11
  [83775a58] + Zlib_jll v1.2.13+0
  [8e850ede] + nghttp2_jll v1.48.0+0
  [3f19e933] + p7zip_jll v17.4.0+0
    Building Conda ─→ `/srv/julia/pkg/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/8c86e48c0db1564a1d49548d3515ced5d604c408/build.log`
    Building IJulia → `/srv/julia/pkg/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/47ac8cc196b81001a711f4b2c12c97372338f00c/build.log`
Precompiling project...
  ✓ Zlib_jll
  ✓ MbedTLS_jll
  ✓ SoftGlobalScope
  ✓ VersionParsing
  ✓ Preferences
  ✓ LibSSH2_jll
  ✓ PrecompileTools
  ✓ JLLWrappers
  ✓ libsodium_jll
  ✓ MbedTLS
  ✓ ZeroMQ_jll
  ✓ ZMQ
  ✓ Parsers
  ✓ JSON
  ✓ Conda
  ✓ IJulia
  16 dependencies successfully precompiled in 65 seconds
[ Info: Installing Julia kernelspec in /srv/conda/envs/notebook/share/jupyter/kernels/julia-1.9
┌ Warning: The active manifest file is an older format with no julia version entry. Dependencies may have been resolved with a different julia version.
└ @ ~/Manifest.toml:0
   Installed JpegTurbo_jll ────────────────── v2.1.91+0
   Installed Libmount_jll ─────────────────── v2.35.0+0
   Installed Calculus ─────────────────────── v0.5.1
   Installed LERC_jll ─────────────────────── v3.0.0+1
   Installed HypergeometricFunctions ──────── v0.3.11
   Installed OffsetArrays ─────────────────── v1.12.9
   Installed StatsFuns ────────────────────── v1.1.1
   Installed LoggingExtras ────────────────── v1.0.0
   Installed FFTW ─────────────────────────── v1.5.0
   Installed ImageMagick ──────────────────── v1.2.2
   Installed GraphPlot ────────────────────── v0.5.2
   Installed Preferences ──────────────────── v1.3.0
   Installed Diana ────────────────────────── v0.3.0
   Installed Contour ──────────────────────── v0.5.7
   Installed InlineStrings ────────────────── v1.4.0
   Installed ProgressMeter ────────────────── v1.7.2
   Installed Measures ─────────────────────── v0.3.2
   Installed Grisu ────────────────────────── v1.0.2
   Installed PDMats ───────────────────────── v0.11.16
   Installed JSON2 ────────────────────────── v0.3.4
   Installed StaticArrays ─────────────────── v1.5.16
   Installed KernelDensityEstimatePlotting ── v0.1.9
   Installed TransformUtils ───────────────── v0.2.15
   Installed RecursiveArrayTools ──────────── v2.32.3
   Installed Xorg_libpthread_stubs_jll ────── v0.1.0+3
   Installed OpenSSL ──────────────────────── v1.3.3
   Installed Media ────────────────────────── v0.5.0
   Installed Cairo_jll ────────────────────── v1.16.1+1
   Installed Fontconfig_jll ───────────────── v2.13.93+0
   Installed FileIO ───────────────────────── v1.16.0
   Installed IntelOpenMP_jll ──────────────── v2018.0.3+2
   Installed Libgpg_error_jll ─────────────── v1.42.0+0
   Installed HTTP ─────────────────────────── v1.7.4
   Installed ZygoteRules ──────────────────── v0.2.2
   Installed MetaGraphs ───────────────────── v0.7.2
   Installed Xorg_libXau_jll ──────────────── v1.0.9+4
   Installed Missings ─────────────────────── v1.1.0
   Installed Distances ────────────────────── v0.10.7
   Installed TupleTools ───────────────────── v1.3.0
   Installed Kronecker ────────────────────── v0.5.3
   Installed Fontconfig ───────────────────── v0.4.1
   Installed Showoff ──────────────────────── v1.0.3
   Installed RealDot ──────────────────────── v0.1.0
   Installed IrrationalConstants ──────────── v0.1.1
   Installed FiniteDiff ───────────────────── v2.18.0
   Installed ArnoldiMethod ────────────────── v0.2.0
   Installed Pango_jll ────────────────────── v1.50.9+0
   Installed LinearMaps ───────────────────── v3.9.0
   Installed NLsolve ──────────────────────── v4.5.1
   Installed JSON ─────────────────────────── v0.21.3
   Installed ColorSchemes ─────────────────── v3.20.0
   Installed IncrementalInference ─────────── v0.32.3
   Installed Bzip2_jll ────────────────────── v1.0.8+0
   Installed SimpleBufferStream ───────────── v1.1.0
   Installed SpecialFunctions ─────────────── v2.2.0
   Installed HarfBuzz_jll ─────────────────── v2.8.1+1
   Installed Einsum ───────────────────────── v0.4.1
   Installed TensorCast ───────────────────── v0.4.6
   Installed KernelDensityEstimate ────────── v0.5.11
   Installed NaNMath ──────────────────────── v1.0.2
   Installed HybridArrays ─────────────────── v0.4.15
   Installed Gadfly ───────────────────────── v1.3.4
   Installed RoME ─────────────────────────── v0.21.2
   Installed StaticArraysCore ─────────────── v1.4.0
   Installed LZO_jll ──────────────────────── v2.10.1+0
   Installed ArrayInterfaceCore ───────────── v0.1.29
   Installed Manifolds ────────────────────── v0.8.47
   Installed TranscodingStreams ───────────── v0.9.11
   Installed FriBidi_jll ──────────────────── v1.0.10+0
   Installed SnoopPrecompile ──────────────── v1.0.3
   Installed DistributedFactorGraphs ──────── v0.19.3
   Installed Graphs ───────────────────────── v1.8.0
   Installed Loess ────────────────────────── v0.5.4
   Installed NLSolversBase ────────────────── v7.8.3
   Installed Graphics ─────────────────────── v1.1.2
   Installed Rmath_jll ────────────────────── v0.4.0+0
   Installed Ratios ───────────────────────── v0.4.3
   Installed CommonSubexpressions ─────────── v0.3.0
   Installed Colors ───────────────────────── v0.12.10
   Installed FreeType2_jll ────────────────── v2.10.4+0
   Installed ImageMagick_jll ──────────────── v6.9.10-12+3
   Installed MappedArrays ─────────────────── v0.4.1
   Installed PaddedViews ──────────────────── v0.5.11
   Installed DataStructures ───────────────── v0.18.13
   Installed StatsAPI ─────────────────────── v1.5.0
   Installed ExprTools ────────────────────── v0.1.8
   Installed Compat ───────────────────────── v4.6.0
   Installed RoMEPlotting ─────────────────── v0.10.2
   Installed CodecZlib ────────────────────── v0.7.1
   Installed NamedDims ────────────────────── v0.2.50
   Installed MosaicViews ──────────────────── v0.3.4
   Installed StatsBase ────────────────────── v0.33.21
   Installed CovarianceEstimation ─────────── v0.2.8
   Installed libpng_jll ───────────────────── v1.6.38+0
   Installed Xorg_libxcb_jll ──────────────── v1.13.0+3
   Installed StructTypes ──────────────────── v1.10.0
   Installed Scratch ──────────────────────── v1.1.1
   Installed ColorTypes ───────────────────── v0.11.4
   Installed ImageCore ────────────────────── v0.9.4
   Installed TransmuteDims ────────────────── v0.1.15
   Installed Xorg_libXext_jll ─────────────── v1.3.4+4
   Installed DiffRules ────────────────────── v1.12.2
   Installed Zstd_jll ─────────────────────── v1.5.4+0
   Installed TensorCore ───────────────────── v0.1.1
   Installed JSON3 ────────────────────────── v1.12.0
   Installed TableTraits ──────────────────── v1.0.1
   Installed Expat_jll ────────────────────── v2.4.8+0
   Installed ManifoldDiff ─────────────────── v0.3.1
   Installed JLD2 ─────────────────────────── v0.4.30
   Installed PositiveFactorizations ───────── v0.2.4
   Installed Inflate ──────────────────────── v0.1.3
   Installed DiffResults ──────────────────── v1.1.0
   Installed Parsers ──────────────────────── v2.5.7
   Installed CategoricalArrays ────────────── v0.10.7
   Installed ImageShow ────────────────────── v0.3.7
   Installed Hexagons ─────────────────────── v0.2.0
   Installed Libtiff_jll ──────────────────── v4.4.0+0
   Installed MKL_jll ──────────────────────── v2022.2.0+0
   Installed Setfield ─────────────────────── v1.1.1
   Installed AbstractFFTs ─────────────────── v1.2.1
   Installed MatrixEquations ──────────────── v2.2.7
   Installed TimeZones ────────────────────── v1.9.1
   Installed ArrayInterfaceStaticArraysCore ─ v0.1.3
   Installed DataValueInterfaces ──────────── v1.0.0
   Installed Libffi_jll ───────────────────── v3.2.2+1
   Installed ColorVectorSpace ─────────────── v0.9.10
   Installed ConstructionBase ─────────────── v1.4.1
   Installed OrderedCollections ───────────── v1.4.1
   Installed JLLWrappers ──────────────────── v1.4.1
   Installed CoordinateTransformations ────── v0.6.2
   Installed Xorg_libXrender_jll ──────────── v0.9.10+4
   Installed Combinatorics ────────────────── v1.0.2
   Installed XSLT_jll ─────────────────────── v1.1.34+0
   Installed KernelDensity ────────────────── v0.6.5
   Installed ChainRulesCore ───────────────── v1.15.7
   Installed ArrayInterface ───────────────── v7.1.0
   Installed Reexport ─────────────────────── v1.2.2
   Installed LineSearches ─────────────────── v7.2.0
   Installed FunctionalStateMachine ───────── v0.2.9
   Installed LogExpFunctions ──────────────── v0.3.23
   Installed StackViews ───────────────────── v0.1.1
   Installed Quaternions ──────────────────── v0.7.4
   Installed MacroTools ───────────────────── v0.5.10
   Installed Strided ──────────────────────── v1.2.3
   Installed Rotations ────────────────────── v1.3.4
   Installed FFTW_jll ─────────────────────── v3.3.10+0
   Installed OpenSpecFun_jll ──────────────── v0.5.5+0
   Installed UnPack ───────────────────────── v1.0.2
   Installed Libuuid_jll ──────────────────── v2.36.0+0
   Installed CoupledFields ────────────────── v0.2.0
   Installed SimpleTraits ─────────────────── v0.9.4
   Installed InverseFunctions ─────────────── v0.1.8
   Installed Compose ──────────────────────── v0.9.5
   Installed DocStringExtensions ──────────── v0.8.6
   Installed GPUArraysCore ────────────────── v0.1.4
   Installed Adapt ────────────────────────── v3.5.0
   Installed Graphite2_jll ────────────────── v1.3.14+0
   Installed Pixman_jll ───────────────────── v0.40.1+0
   Installed DualNumbers ──────────────────── v0.6.8
   Installed Rmath ────────────────────────── v0.7.1
   Installed XML2_jll ─────────────────────── v2.10.3+0
   Installed ImageBase ────────────────────── v0.1.5
   Installed Gettext_jll ──────────────────── v0.21.0+0
   Installed Xorg_xtrans_jll ──────────────── v1.4.0+3
   Installed OpenSSL_jll ──────────────────── v1.1.20+0
   Installed Mocking ──────────────────────── v0.7.5
   Installed IterTools ────────────────────── v1.4.0
   Installed BitFlags ─────────────────────── v0.1.7
   Installed Cairo ────────────────────────── v1.0.5
   Installed Libgcrypt_jll ────────────────── v1.8.7+0
   Installed IndirectArrays ───────────────── v1.0.0
   Installed Interpolations ───────────────── v0.14.7
   Installed SimpleWeightedGraphs ─────────── v1.3.0
   Installed Tables ───────────────────────── v1.10.0
   Installed RecipesBase ──────────────────── v1.3.3
   Installed Libiconv_jll ─────────────────── v1.16.1+2
   Installed DataAPI ──────────────────────── v1.14.0
   Installed IteratorInterfaceExtensions ──── v1.0.0
   Installed FixedPointNumbers ────────────── v0.8.4
   Installed Optim ────────────────────────── v1.7.4
   Installed IniFile ──────────────────────── v0.5.1
   Installed URIs ─────────────────────────── v1.4.2
   Installed Glib_jll ─────────────────────── v2.74.0+2
   Installed LazyStack ────────────────────── v0.1.1
   Installed ForwardDiff ──────────────────── v0.10.34
   Installed BSON ─────────────────────────── v0.3.6
   Installed QuadGK ───────────────────────── v2.8.1
   Installed FillArrays ───────────────────── v0.13.7
   Installed AxisAlgorithms ───────────────── v1.0.1
   Installed Requires ─────────────────────── v1.3.0
   Installed Xorg_libXdmcp_jll ────────────── v1.1.3+4
   Installed ApproxManifoldProducts ───────── v0.6.3
   Installed Xorg_libX11_jll ──────────────── v1.6.9+4
   Installed Parameters ───────────────────── v0.12.3
   Installed Juno ─────────────────────────── v0.8.4
   Installed ManifoldsBase ────────────────── v0.13.30
   Installed Distributions ────────────────── v0.25.81
   Installed SortingAlgorithms ────────────── v1.1.0
   Installed WoodburyMatrices ─────────────── v0.5.5
   Installed DensityInterface ─────────────── v0.4.0
   Installed ChangesOfVariables ───────────── v0.1.6
   Installed NavAbilitySDK ────────────────── v0.5.0
    Building TimeZones → `/srv/julia/pkg/scratchspaces/44cfe95a-1eb2-52ea-b672-e2afdf69b78f/a92ec4466fc6e3dd704e2668b5e7f24add36d242/build.log`
Precompiling project...
  ✓ SuiteSparse
  ✓ IteratorInterfaceExtensions
  ✓ UnPack
  ✓ OpenLibm_jll
  ✓ IndirectArrays
  ✓ StatsAPI
  ✓ TensorCore
  ✓ ExprTools
  ✓ Measures
  ✓ PositiveFactorizations
  ✓ InverseFunctions
  ✓ CompilerSupportLibraries_jll
  ✓ Statistics
  ✓ Calculus
  ✓ WoodburyMatrices
  ✓ DataValueInterfaces
  ✓ RealDot
  ✓ Preferences
  ✓ Combinatorics
  ✓ Requires
  ✓ IterTools
  ✓ Compat
  ✓ OrderedCollections
  ✓ Reexport
  ✓ IniFile
  ✓ Grisu
  ✓ StructTypes
  ✓ SimpleBufferStream
  ✓ Hexagons
  ✓ PCRE2_jll
  ✓ DocStringExtensions
  ✓ URIs
  ✓ DataAPI
  ✓ DelimitedFiles
  ✓ ConstructionBase
  ✓ Inflate
  ✓ Adapt
  ✓ Scratch
  ✓ BitFlags
  ✓ IrrationalConstants
  ✓ ProgressMeter
  ✓ BSON
  ✓ StaticArraysCore
  ✓ TableTraits
  ✓ LoggingExtras
  ✓ TranscodingStreams
  ✓ TupleTools
  ✓ MappedArrays
  ✓ NaNMath
  ✓ DensityInterface
  ✓ AxisAlgorithms
  ✓ SnoopPrecompile
  ✓ PDMats
  ✓ Ratios
  ✓ Quaternions
  ✓ JLLWrappers
  ✓ Mocking
  ✓ Einsum
  ✓ Showoff
  ✓ Parameters
  ✓ Distances
  ✓ GPUArraysCore
  ✓ Missings
  ✓ FunctionalStateMachine
  ✓ DiffResults
  ✓ FillArrays
  ✓ MacroTools
  ✓ CodecZlib
  ✓ OpenSSL_jll
  ✓ Graphite2_jll
  ✓ ArrayInterface
  ✓ Strided
  ✓ Libmount_jll
  ✓ ChainRulesCore
  ✓ OffsetArrays
  ✓ ArrayInterfaceCore
  ✓ Bzip2_jll
  ✓ ManifoldsBase
  ✓ Rmath_jll
  ✓ Tables
  ✓ Xorg_libXau_jll
  ✓ libpng_jll
  ✓ IntelOpenMP_jll
  ✓ LERC_jll
  ✓ Pixman_jll
  ✓ Xorg_libXdmcp_jll
  ✓ JpegTurbo_jll
  ✓ Zstd_jll
  ✓ Expat_jll
  ✓ LZO_jll
  ✓ Xorg_xtrans_jll
  ✓ RecipesBase
  ✓ Libgpg_error_jll
  ✓ Libffi_jll
  ✓ FFTW_jll
  ✓ Libiconv_jll
  ✓ FixedPointNumbers
  ✓ Xorg_libpthread_stubs_jll
  ✓ Libuuid_jll
  ✓ FriBidi_jll
  ✓ OpenSpecFun_jll
  ✓ Loess
  ✓ CommonSubexpressions
  ✓ ChangesOfVariables
  ✓ Media
  ✓ SimpleTraits
  ✓ ZygoteRules
  ✓ AbstractFFTs
  ✓ DataStructures
  ✓ LazyStack
  ✓ StackViews
  ✓ TransmuteDims
  ✓ ArrayInterfaceStaticArraysCore
  ✓ Setfield
  ✓ PaddedViews
  ✓ FreeType2_jll
  ✓ Libtiff_jll
  ✓ MKL_jll
  ✓ FileIO
  ✓ Libgcrypt_jll
  ✓ CategoricalArrays
  ✓ ManifoldDiff
  ✓ XML2_jll
  ✓ LogExpFunctions
  ✓ SortingAlgorithms
  ✓ Rmath
  ✓ MosaicViews
  ✓ Fontconfig_jll
  ✓ Gettext_jll
  ✓ XSLT_jll
  ✓ QuadGK
  ✓ OpenSSL
  ✓ ImageMagick_jll
  ✓ Fontconfig
  ✓ Juno
  ✓ LinearMaps
  ✓ Glib_jll
  ✓ Xorg_libxcb_jll
  ✓ Xorg_libX11_jll
  ✓ RecursiveArrayTools
  ✓ ColorTypes
  ✓ Xorg_libXrender_jll
  ✓ Xorg_libXext_jll
  ✓ Cairo_jll
  ✓ HarfBuzz_jll
  ✓ SpecialFunctions
  ✓ StatsBase
  ✓ Pango_jll
  ✓ DiffRules
  ✓ CoupledFields
  ✓ CovarianceEstimation
  ✓ DualNumbers
  ✓ MatrixEquations
  ✓ StaticArrays
  ✓ HTTP
  ✓ HypergeometricFunctions
  ✗ FFTW
  ✓ Contour
  ✓ NamedDims
  ✓ CoordinateTransformations
  ✓ FiniteDiff
  ✓ HybridArrays
  ✓ ArnoldiMethod
  ✓ ColorVectorSpace
  ✓ Kronecker
  ✓ Colors
  ✓ Interpolations
  ✓ Rotations
  ✓ StatsFuns
  ✓ Graphics
  ✓ Cairo
  ✓ ForwardDiff
  ✓ NLSolversBase
  ✓ Graphs
  ✓ SimpleWeightedGraphs
  ✓ LineSearches
  ✓ NLsolve
  ✓ ColorSchemes
  ✓ Distributions
  ✓ TensorCast
  ✓ KernelDensityEstimate
  ✓ Optim
  ✓ JLD2
  ✓ MetaGraphs
  ✓ Parsers
  ✓ InlineStrings
  ✓ JSON2
  ✓ JSON
  ✓ Diana
  ✓ NavAbilitySDK
  ✓ Compose
  ✓ Manifolds
  ✓ GraphPlot
  ✓ TimeZones
  ✓ JSON3
  ✓ TransformUtils
  ✓ KernelDensity
  ✓ ApproxManifoldProducts
  ✓ DistributedFactorGraphs
  ✓ ImageCore
  ✓ ImageBase
  ✓ Gadfly
  ✓ ImageMagick
  ✓ ImageShow
  ✓ KernelDensityEstimatePlotting
  ✗ IncrementalInference
  ✗ RoME
  ✗ RoMEPlotting
  204 dependencies successfully precompiled in 411 seconds. 4 already precompiled.
  4 dependencies errored. To see a full report either run `import Pkg; Pkg.precompile()` or load the packages
  2 dependencies had warnings during precompilation:
┌ DistributedFactorGraphs [b5cc3c7e-6572-11e9-2517-99fb8daf2f04]
│  WARNING: Method definition (::Type{DistributedFactorGraphs.VariableNodeData{T, P}})() where {T<:DistributedFactorGraphs.InferenceVariable, P} in module DistributedFactorGraphs at util.jl:579 overwritten at /srv/julia/pkg/packages/DistributedFactorGraphs/6Qnsv/src/entities/DFGVariable.jl:85.
│    ** incremental compilation may be fatally broken for this module **
│  
│  WARNING: Method definition kwcall(Any, Type{DistributedFactorGraphs.VariableNodeData{T, P}}) where {T<:DistributedFactorGraphs.InferenceVariable, P} in module DistributedFactorGraphs at util.jl:579 overwritten at /srv/julia/pkg/packages/DistributedFactorGraphs/6Qnsv/src/entities/DFGVariable.jl:85.
│    ** incremental compilation may be fatally broken for this module **
└  
┌ ApproxManifoldProducts [9bbbb610-88a1-53cd-9763-118ce10c1f89]
│  [ Info: KernelDensityEstimate.FORCE_EVAL_DIRECT = true
└  
   Installed DelimitedFiles ─ v1.9.1
┌ Warning: The active manifest file at `/home/jovyan/Manifest.toml` has an old format that is being maintained.
│ To update to the new format, which is supported by Julia versions ≥ 1.6.2, run `import Pkg; Pkg.upgrade_manifest()` which will upgrade the format without re-resolving.
│ To then record the julia version re-resolve with `Pkg.resolve()` and if there are resolve conflicts consider `Pkg.update()`.
└ @ Pkg.Types /srv/julia/share/julia/stdlib/v1.9/Pkg/src/manifest.jl:316
  No Changes to `~/Project.toml`
    Updating `~/Manifest.toml`
  [8bb1440f] + DelimitedFiles v1.9.1
  [44cfe95a] ↑ Pkg v1.8.0 ⇒ v1.9.2
  [10745b16] ~ Statistics ⇒ v1.9.0
  [fa267f1f] ↑ TOML v1.0.0 ⇒ v1.0.3
  [a4e569a6] ↓ Tar v1.10.1 ⇒ v1.10.0
  [e66e0078] ↑ CompilerSupportLibraries_jll v1.0.1+0 ⇒ v1.0.5+0
  [c8ffd9c3] ↑ MbedTLS_jll v2.28.0+0 ⇒ v2.28.2+0
  [14a3606d] ↑ MozillaCACerts_jll v2022.2.1 ⇒ v2022.10.11
  [4536629a] ↑ OpenBLAS_jll v0.3.20+0 ⇒ v0.3.21+4
  [efcefdf7] ↑ PCRE2_jll v10.40.0+0 ⇒ v10.42.0+0
  [bea87d4a] + SuiteSparse_jll v5.10.1+6
  [83775a58] ↑ Zlib_jll v1.2.12+3 ⇒ v1.2.13+0
  [8e850b90] ↑ libblastrampoline_jll v5.1.1+0 ⇒ v5.8.0+0
┌ Warning: The Pkg REPL mode is intended for interactive use only, and should not be used from scripts. It is recommended to use the functional API instead.
└ @ Pkg.REPLMode /srv/julia/share/julia/stdlib/v1.9/Pkg/src/REPLMode/REPLMode.jl:382
Precompiling project...
  ✓ LogExpFunctions → LogExpFunctionsInverseFunctionsExt
  ✓ ArrayInterface → ArrayInterfaceStaticArraysCoreExt
  ✓ ArrayInterface → ArrayInterfaceGPUArraysCoreExt
  ✓ SuiteSparse_jll
  ✓ DelimitedFiles
  ✓ LogExpFunctions → LogExpFunctionsChainRulesCoreExt
  ✓ FiniteDiff
  ✓ GraphPlot
  ✓ StatsBase
  ✓ SpecialFunctions
  ✓ CoupledFields
  ✓ CovarianceEstimation
  ✓ DiffRules
  ✓ DualNumbers
  ✓ SpecialFunctions → SpecialFunctionsChainRulesCoreExt
  ✓ NamedDims
  ✓ HypergeometricFunctions
  ✓ ColorVectorSpace
  ✓ Kronecker
  ✓ StatsFuns
  ✓ ForwardDiff
  ✓ NLSolversBase
  ✓ LineSearches
  ✓ NLsolve
  ✓ ColorSchemes
  ✓ Distributions
  ✓ Optim
  ✓ KernelDensityEstimate
  ✓ KernelDensity
  ✓ DistributedFactorGraphs
  ✓ Gadfly
  ✓ Manifolds
  ✓ KernelDensityEstimatePlotting
  ✓ TransformUtils
  ✓ ApproxManifoldProducts
  ✓ ImageCore
  ✓ ImageBase
  ✓ ImageMagick
  ✓ ImageShow
  ✓ IncrementalInference
  ✗ RoME
  ✗ RoMEPlotting
  40 dependencies successfully precompiled in 532 seconds. 175 already precompiled.
  3 dependencies had warnings during precompilation:
┌ DistributedFactorGraphs [b5cc3c7e-6572-11e9-2517-99fb8daf2f04]
│  WARNING: Method definition (::Type{DistributedFactorGraphs.VariableNodeData{T, P}})() where {T<:DistributedFactorGraphs.InferenceVariable, P} in module DistributedFactorGraphs at util.jl:579 overwritten at /srv/julia/pkg/packages/DistributedFactorGraphs/6Qnsv/src/entities/DFGVariable.jl:85.
│    ** incremental compilation may be fatally broken for this module **
│  
│  WARNING: Method definition kwcall(Any, Type{DistributedFactorGraphs.VariableNodeData{T, P}}) where {T<:DistributedFactorGraphs.InferenceVariable, P} in module DistributedFactorGraphs at util.jl:579 overwritten at /srv/julia/pkg/packages/DistributedFactorGraphs/6Qnsv/src/entities/DFGVariable.jl:85.
│    ** incremental compilation may be fatally broken for this module **
└  
┌ IncrementalInference [904591bb-b899-562f-9e6f-b8df64c7d480]
│  WARNING: Method definition adapt_storage(Type{var"#s1"} where var"#s1"<:(StaticArraysCore.SArray{S, T, N, L} where L where N where T), Array{T, N} where N where T) where {S} in module ArrayInterfaceStaticArraysCore at /srv/julia/pkg/packages/ArrayInterfaceStaticArraysCore/4vyfn/src/ArrayInterfaceStaticArraysCore.jl:31 overwritten in module ArrayInterfaceStaticArraysCoreExt at /srv/julia/pkg/packages/ArrayInterface/lyyrK/ext/ArrayInterfaceStaticArraysCoreExt.jl:32.
│    ** incremental compilation may be fatally broken for this module **
│  
│  WARNING: Method definition (::Type{DistributedFactorGraphs.VariableNodeData{T, P}})() where {T<:DistributedFactorGraphs.InferenceVariable, P} in module DistributedFactorGraphs at /srv/julia/pkg/packages/DistributedFactorGraphs/6Qnsv/src/entities/DFGVariable.jl:85 overwritten at util.jl:579.
│    ** incremental compilation may be fatally broken for this module **
│  
│  WARNING: Method definition kwcall(Any, Type{DistributedFactorGraphs.VariableNodeData{T, P}}) where {T<:DistributedFactorGraphs.InferenceVariable, P} in module DistributedFactorGraphs at /srv/julia/pkg/packages/DistributedFactorGraphs/6Qnsv/src/entities/DFGVariable.jl:85 overwritten at util.jl:579.
│    ** incremental compilation may be fatally broken for this module **
│  
│  [ Info: KernelDensityEstimate.FORCE_EVAL_DIRECT = true
│  [ Info: x1 is not initialized, and will do so now...
│  [ Info: try doautoinit! of x1
│  [ Info: init with useinitfct [:x1f1]
│  [ Info: do init of x1
│  ┌ Warning: updateVariableSolverData with solveKey parameter might change in the future, see DFG #565. Future warnings are suppressed
│  └ @ DistributedFactorGraphs /srv/julia/pkg/packages/DistributedFactorGraphs/6Qnsv/src/services/DFGVariable.jl:659
│  [ Info: x2 is not initialized, and will do so now...
│  [ Info: try doautoinit! of x2
│  [ Info: init with useinitfct [:x1x2f1]
│  [ Info: do init of x2
│  ┌ Warning: CommonConvWrapper.threadmodel is obsolete
│  └ @ IncrementalInference /srv/julia/pkg/packages/IncrementalInference/0Ixam/src/Deprecated.jl:33
│  ┌ Warning: CommonConvWrapper.threadmodel is obsolete
│  └ @ IncrementalInference /srv/julia/pkg/packages/IncrementalInference/0Ixam/src/Deprecated.jl:33
│  ┌ Warning: CommonConvWrapper.threadmodel is obsolete
│  └ @ IncrementalInference /srv/julia/pkg/packages/IncrementalInference/0Ixam/src/Deprecated.jl:33
│  [ Info: x3 is not initialized, and will do so now...
│  [ Info: try doautoinit! of x3
│  [ Info: init with useinitfct [:x2x3f1]
│  [ Info: do init of x3
│  [ Info: l1 is not initialized, and will do so now...
│  [ Info: try doautoinit! of l1
│  [ Info: init with useinitfct [:x1l1f1, :x2l1f1]
│  [ Info: do init of l1
│  [ Info: l2 is not initialized, and will do so now...
│  [ Info: try doautoinit! of l2
│  [ Info: init with useinitfct [:x3l2f1]
│  [ Info: do init of l2
│  [ Info: Ensure variables are all initialized (graphinit)
│  [ Info: Solving over the Bayes (Junction) tree.
│  [ Info: Bayes Tree Complete
│  [ Info: Do tree based init-ference
Solve Progress: approx max 72, at iter 2         Time: 0:00:02Solve Progress: approx max 72, at iter 3   Time: 0:00:02Solve ProgrSolve Progress: approx max 72, at iter 20 0:02   Time: 0:00:28[ Info: CSM-5 Clique 1 finished, solveKey=default
Solve Progress: approx max 72, at iter 31        Time: 0:00:33Solve Progress: approx max 72, at iter 32          Time: 0:00:33[ Info: CSM-5 Clique 3 finished, solveKey=default
│  [ Info: CSM-5 Clique 2 finished, solveKey=default
Solve Progress: approx max 72, at iter 35        Time: 0:00:33
│  [ Info: Finished tree based init-ference
│  ┌ Warning: Don't use cliques field directly, use eg. getClique(tree, cliqId)
│  └ @ IncrementalInference /srv/julia/pkg/packages/IncrementalInference/0Ixam/src/services/JunctionTree.jl:18
│  ┌ Warning: `setproperty!(clique)` Don't use cliques field directly, use eg. addClique(tree, cliqId)
│  └ @ IncrementalInference /srv/julia/pkg/packages/IncrementalInference/0Ixam/src/services/JunctionTree.jl:32
└  
┌ ApproxManifoldProducts [9bbbb610-88a1-53cd-9763-118ce10c1f89]
│  WARNING: Method definition adapt_storage(Type{var"#s1"} where var"#s1"<:(StaticArraysCore.SArray{S, T, N, L} where L where N where T), Array{T, N} where N where T) where {S} in module ArrayInterfaceStaticArraysCore at /srv/julia/pkg/packages/ArrayInterfaceStaticArraysCore/4vyfn/src/ArrayInterfaceStaticArraysCore.jl:31 overwritten in module ArrayInterfaceStaticArraysCoreExt at /srv/julia/pkg/packages/ArrayInterface/lyyrK/ext/ArrayInterfaceStaticArraysCoreExt.jl:32.
│    ** incremental compilation may be fatally broken for this module **
│  
│  [ Info: KernelDensityEstimate.FORCE_EVAL_DIRECT = true
└  

ERROR: The following 2 direct dependencies failed to precompile:

RoMEPlotting [238d586b-a4bf-555c-9891-eda6fc5e55a2]

Failed to precompile RoMEPlotting [238d586b-a4bf-555c-9891-eda6fc5e55a2] to "/srv/julia/pkg/compiled/v1.9/RoMEPlotting/jl_CjaRhy".
WARNING: Method definition (::Type{DistributedFactorGraphs.VariableNodeData{T, P}})() where {T<:DistributedFactorGraphs.InferenceVariable, P} in module DistributedFactorGraphs at /srv/julia/pkg/packages/DistributedFactorGraphs/6Qnsv/src/entities/DFGVariable.jl:85 overwritten at util.jl:579.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition kwcall(Any, Type{DistributedFactorGraphs.VariableNodeData{T, P}}) where {T<:DistributedFactorGraphs.InferenceVariable, P} in module DistributedFactorGraphs at /srv/julia/pkg/packages/DistributedFactorGraphs/6Qnsv/src/entities/DFGVariable.jl:85 overwritten at util.jl:579.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition adapt_storage(Type{var"#s1"} where var"#s1"<:(StaticArraysCore.SArray{S, T, N, L} where L where N where T), Array{T, N} where N where T) where {S} in module ArrayInterfaceStaticArraysCore at /srv/julia/pkg/packages/ArrayInterfaceStaticArraysCore/4vyfn/src/ArrayInterfaceStaticArraysCore.jl:31 overwritten in module ArrayInterfaceStaticArraysCoreExt at /srv/julia/pkg/packages/ArrayInterface/lyyrK/ext/ArrayInterfaceStaticArraysCoreExt.jl:32.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition adapt_storage(Type{var"#s1"} where var"#s1"<:(StaticArraysCore.SArray{S, T, N, L} where L where N where T), Array{T, N} where N where T) where {S} in module ArrayInterfaceStaticArraysCore at /srv/julia/pkg/packages/ArrayInterfaceStaticArraysCore/4vyfn/src/ArrayInterfaceStaticArraysCore.jl:31 overwritten in module ArrayInterfaceStaticArraysCoreExt at /srv/julia/pkg/packages/ArrayInterface/lyyrK/ext/ArrayInterfaceStaticArraysCoreExt.jl:32.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition (::Type{DistributedFactorGraphs.VariableNodeData{T, P}})() where {T<:DistributedFactorGraphs.InferenceVariable, P} in module DistributedFactorGraphs at /srv/julia/pkg/packages/DistributedFactorGraphs/6Qnsv/src/entities/DFGVariable.jl:85 overwritten at util.jl:579.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition kwcall(Any, Type{DistributedFactorGraphs.VariableNodeData{T, P}}) where {T<:DistributedFactorGraphs.InferenceVariable, P} in module DistributedFactorGraphs at /srv/julia/pkg/packages/DistributedFactorGraphs/6Qnsv/src/entities/DFGVariable.jl:85 overwritten at util.jl:579.
  ** incremental compilation may be fatally broken for this module **

[ Info: try doautoinit! of x0
[ Info: try doautoinit! of x0
[ Info: init with useinitfct [:x0f1]
[ Info: do init of x0
┌ Warning: updateVariableSolverData with solveKey parameter might change in the future, see DFG #565. Future warnings are suppressed
└ @ DistributedFactorGraphs /srv/julia/pkg/packages/DistributedFactorGraphs/6Qnsv/src/services/DFGVariable.jl:659
[ Info: try doautoinit! of x1
[ Info: try doautoinit! of x1
[ Info: init with useinitfct [:x0x1f1]
[ Info: do init of x1
┌ Warning: CommonConvWrapper.threadmodel is obsolete
└ @ IncrementalInference /srv/julia/pkg/packages/IncrementalInference/0Ixam/src/Deprecated.jl:33
┌ Warning: CommonConvWrapper.threadmodel is obsolete
└ @ IncrementalInference /srv/julia/pkg/packages/IncrementalInference/0Ixam/src/Deprecated.jl:33
┌ Warning: CommonConvWrapper.threadmodel is obsolete
└ @ IncrementalInference /srv/julia/pkg/packages/IncrementalInference/0Ixam/src/Deprecated.jl:33
[ Info: try doautoinit! of x2
[ Info: try doautoinit! of x2
[ Info: init with useinitfct [:x1x2f1]
[ Info: do init of x2
[ Info: try doautoinit! of x3
[ Info: try doautoinit! of x3
[ Info: init with useinitfct [:x2x3f1]
[ Info: do init of x3
[ Info: try doautoinit! of x4
[ Info: try doautoinit! of x4
[ Info: init with useinitfct [:x3x4f1]
[ Info: do init of x4
[ Info: try doautoinit! of x5
[ Info: try doautoinit! of x5
[ Info: init with useinitfct [:x4x5f1]
[ Info: do init of x5
[ Info: try doautoinit! of x6
[ Info: try doautoinit! of l1
[ Info: try doautoinit! of x6
[ Info: init with useinitfct [:x5x6f1]
[ Info: do init of x6
[ Info: try doautoinit! of l1
[ Info: init with useinitfct [:x0l1f1, :x6l1f1]
[ Info: do init of l1
ERROR: LoadError: fatal error in type inference (type bound)
Stacktrace:
  [1] initAll!(dfg::DistributedFactorGraphs.GraphsDFGs.GraphsDFG{IncrementalInference.SolverParams, DistributedFactorGraphs.DFGVariable, DistributedFactorGraphs.DFGFactor}, solveKey::Symbol; _parametricInit::Bool, solvable::Int64, N::Int64)
    @ IncrementalInference /srv/julia/pkg/packages/IncrementalInference/0Ixam/src/services/GraphInit.jl:507
  [2] initAll! (repeats 2 times)
    @ /srv/julia/pkg/packages/IncrementalInference/0Ixam/src/services/GraphInit.jl:492 [inlined]
  [3] warmUpSolverJIT(; fg::DistributedFactorGraphs.GraphsDFGs.GraphsDFG{IncrementalInference.SolverParams, DistributedFactorGraphs.DFGVariable, DistributedFactorGraphs.DFGFactor}, drawtree::Bool)
    @ RoME /srv/julia/pkg/packages/RoME/vbvnr/src/services/AdditionalUtils.jl:18
  [4] warmUpSolverJIT()
    @ RoME /srv/julia/pkg/packages/RoME/vbvnr/src/services/AdditionalUtils.jl:8
  [5] _doPrecompileWorkload(; skipCompile::Bool)
    @ RoME /srv/julia/pkg/packages/RoME/vbvnr/src/RoME.jl:164
  [6] _doPrecompileWorkload()
    @ RoME /srv/julia/pkg/packages/RoME/vbvnr/src/RoME.jl:154
  [7] macro expansion
    @ /srv/julia/pkg/packages/RoME/vbvnr/src/RoME.jl:169 [inlined]
  [8] top-level scope
    @ /srv/julia/pkg/packages/SnoopPrecompile/1XXT1/src/SnoopPrecompile.jl:62
  [9] include
    @ ./Base.jl:457 [inlined]
 [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
    @ Base ./loading.jl:2049
 [11] top-level scope
    @ stdin:3
in expression starting at /srv/julia/pkg/packages/RoME/vbvnr/src/RoME.jl:1
in expression starting at stdin:3
ERROR: LoadError: Failed to precompile RoME [91fb55c2-4c03-5a59-ba21-f4ea956187b8] to "/srv/julia/pkg/compiled/v1.9/RoME/jl_w2hdRC".
Stacktrace:
  [1] error(s::String)
    @ Base ./error.jl:35
  [2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool)
    @ Base ./loading.jl:2300
  [3] compilecache
    @ ./loading.jl:2167 [inlined]
  [4] _require(pkg::Base.PkgId, env::String)
    @ Base ./loading.jl:1805
  [5] _require_prelocked(uuidkey::Base.PkgId, env::String)
    @ Base ./loading.jl:1660
  [6] macro expansion
    @ ./loading.jl:1648 [inlined]
  [7] macro expansion
    @ ./lock.jl:267 [inlined]
  [8] require(into::Module, mod::Symbol)
    @ Base ./loading.jl:1611
  [9] include
    @ ./Base.jl:457 [inlined]
 [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2049
 [11] top-level scope
    @ stdin:3
in expression starting at /srv/julia/pkg/packages/RoMEPlotting/RkTd8/src/RoMEPlotting.jl:1
in expression starting at stdin:3

RoME [91fb55c2-4c03-5a59-ba21-f4ea956187b8]

Failed to precompile RoME [91fb55c2-4c03-5a59-ba21-f4ea956187b8] to "/srv/julia/pkg/compiled/v1.9/RoME/jl_0G7vl7".
WARNING: Method definition adapt_storage(Type{var"#s1"} where var"#s1"<:(StaticArraysCore.SArray{S, T, N, L} where L where N where T), Array{T, N} where N where T) where {S} in module ArrayInterfaceStaticArraysCore at /srv/julia/pkg/packages/ArrayInterfaceStaticArraysCore/4vyfn/src/ArrayInterfaceStaticArraysCore.jl:31 overwritten in module ArrayInterfaceStaticArraysCoreExt at /srv/julia/pkg/packages/ArrayInterface/lyyrK/ext/ArrayInterfaceStaticArraysCoreExt.jl:32.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition (::Type{DistributedFactorGraphs.VariableNodeData{T, P}})() where {T<:DistributedFactorGraphs.InferenceVariable, P} in module DistributedFactorGraphs at /srv/julia/pkg/packages/DistributedFactorGraphs/6Qnsv/src/entities/DFGVariable.jl:85 overwritten at util.jl:579.
  ** incremental compilation may be fatally broken for this module **

WARNING: Method definition kwcall(Any, Type{DistributedFactorGraphs.VariableNodeData{T, P}}) where {T<:DistributedFactorGraphs.InferenceVariable, P} in module DistributedFactorGraphs at /srv/julia/pkg/packages/DistributedFactorGraphs/6Qnsv/src/entities/DFGVariable.jl:85 overwritten at util.jl:579.
  ** incremental compilation may be fatally broken for this module **

[ Info: try doautoinit! of x0
[ Info: try doautoinit! of x0
[ Info: init with useinitfct [:x0f1]
[ Info: do init of x0
┌ Warning: updateVariableSolverData with solveKey parameter might change in the future, see DFG #565. Future warnings are suppressed
└ @ DistributedFactorGraphs /srv/julia/pkg/packages/DistributedFactorGraphs/6Qnsv/src/services/DFGVariable.jl:659
[ Info: try doautoinit! of x1
[ Info: try doautoinit! of x1
[ Info: init with useinitfct [:x0x1f1]
[ Info: do init of x1
┌ Warning: CommonConvWrapper.threadmodel is obsolete
└ @ IncrementalInference /srv/julia/pkg/packages/IncrementalInference/0Ixam/src/Deprecated.jl:33
┌ Warning: CommonConvWrapper.threadmodel is obsolete
└ @ IncrementalInference /srv/julia/pkg/packages/IncrementalInference/0Ixam/src/Deprecated.jl:33
┌ Warning: CommonConvWrapper.threadmodel is obsolete
└ @ IncrementalInference /srv/julia/pkg/packages/IncrementalInference/0Ixam/src/Deprecated.jl:33
[ Info: try doautoinit! of x2
[ Info: try doautoinit! of x2
[ Info: init with useinitfct [:x1x2f1]
[ Info: do init of x2
[ Info: try doautoinit! of x3
[ Info: try doautoinit! of x3
[ Info: init with useinitfct [:x2x3f1]
[ Info: do init of x3
[ Info: try doautoinit! of x4
[ Info: try doautoinit! of x4
[ Info: init with useinitfct [:x3x4f1]
[ Info: do init of x4
[ Info: try doautoinit! of x5
[ Info: try doautoinit! of x5
[ Info: init with useinitfct [:x4x5f1]
[ Info: do init of x5
[ Info: try doautoinit! of x6
[ Info: try doautoinit! of l1
[ Info: try doautoinit! of x6
[ Info: init with useinitfct [:x5x6f1]
[ Info: do init of x6
[ Info: try doautoinit! of l1
[ Info: init with useinitfct [:x0l1f1, :x6l1f1]
[ Info: do init of l1
ERROR: LoadError: fatal error in type inference (type bound)
Stacktrace:
  [1] initAll!(dfg::DistributedFactorGraphs.GraphsDFGs.GraphsDFG{IncrementalInference.SolverParams, DistributedFactorGraphs.DFGVariable, DistributedFactorGraphs.DFGFactor}, solveKey::Symbol; _parametricInit::Bool, solvable::Int64, N::Int64)
    @ IncrementalInference /srv/julia/pkg/packages/IncrementalInference/0Ixam/src/services/GraphInit.jl:507
  [2] initAll! (repeats 2 times)
    @ /srv/julia/pkg/packages/IncrementalInference/0Ixam/src/services/GraphInit.jl:492 [inlined]
  [3] warmUpSolverJIT(; fg::DistributedFactorGraphs.GraphsDFGs.GraphsDFG{IncrementalInference.SolverParams, DistributedFactorGraphs.DFGVariable, DistributedFactorGraphs.DFGFactor}, drawtree::Bool)
    @ RoME /srv/julia/pkg/packages/RoME/vbvnr/src/services/AdditionalUtils.jl:18
  [4] warmUpSolverJIT()
    @ RoME /srv/julia/pkg/packages/RoME/vbvnr/src/services/AdditionalUtils.jl:8
  [5] _doPrecompileWorkload(; skipCompile::Bool)
    @ RoME /srv/julia/pkg/packages/RoME/vbvnr/src/RoME.jl:164
  [6] _doPrecompileWorkload()
    @ RoME /srv/julia/pkg/packages/RoME/vbvnr/src/RoME.jl:154
  [7] macro expansion
    @ /srv/julia/pkg/packages/RoME/vbvnr/src/RoME.jl:169 [inlined]
  [8] top-level scope
    @ /srv/julia/pkg/packages/SnoopPrecompile/1XXT1/src/SnoopPrecompile.jl:62
  [9] include
    @ ./Base.jl:457 [inlined]
 [10] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
    @ Base ./loading.jl:2049
 [11] top-level scope
    @ stdin:3
in expression starting at /srv/julia/pkg/packages/RoME/vbvnr/src/RoME.jl:1
in expression starting at stdin:3

Stacktrace:
 [1] pkgerror(msg::String)
   @ Pkg.Types /srv/julia/share/julia/stdlib/v1.9/Pkg/src/Types.jl:69
 [2] precompile(ctx::Pkg.Types.Context, pkgs::Vector{Pkg.Types.PackageSpec}; internal_call::Bool, strict::Bool, warn_loaded::Bool, already_instantiated::Bool, timing::Bool, kwargs::Base.Pairs{Symbol, Base.PipeEndpoint, Tuple{Symbol}, NamedTuple{(:io,), Tuple{Base.PipeEndpoint}}})
   @ Pkg.API /srv/julia/share/julia/stdlib/v1.9/Pkg/src/API.jl:1581
 [3] precompile(pkgs::Vector{Pkg.Types.PackageSpec}; io::Base.PipeEndpoint, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
   @ Pkg.API /srv/julia/share/julia/stdlib/v1.9/Pkg/src/API.jl:156
 [4] precompile(pkgs::Vector{Pkg.Types.PackageSpec})
   @ Pkg.API /srv/julia/share/julia/stdlib/v1.9/Pkg/src/API.jl:145
 [5] precompile(; name::Nothing, uuid::Nothing, version::Nothing, url::Nothing, rev::Nothing, path::Nothing, mode::Pkg.Types.PackageMode, subdir::Nothing, kwargs::Base.Pairs{Symbol, Union{}, Tuple{}, NamedTuple{(), Tuple{}}})
   @ Pkg.API /srv/julia/share/julia/stdlib/v1.9/Pkg/src/API.jl:171
 [6] precompile()
   @ Pkg.API /srv/julia/share/julia/stdlib/v1.9/Pkg/src/API.jl:162
 [7] do_cmd!(command::Pkg.REPLMode.Command, repl::Pkg.REPLMode.MiniREPL)
   @ Pkg.REPLMode /srv/julia/share/julia/stdlib/v1.9/Pkg/src/REPLMode/REPLMode.jl:409
 [8] do_cmd(repl::Pkg.REPLMode.MiniREPL, input::String; do_rethrow::Bool)
   @ Pkg.REPLMode /srv/julia/share/julia/stdlib/v1.9/Pkg/src/REPLMode/REPLMode.jl:390
 [9] top-level scope
   @ none:1
Removing intermediate container f91482c8f7b1
The command '/bin/sh -c JULIA_PROJECT="" julia -e "using Pkg; Pkg.add(\"IJulia\"); using IJulia; installkernel(\"Julia\", \"--project=${REPO_DIR}\");" && julia --project=${REPO_DIR} -e 'using Pkg; Pkg.instantiate(); Pkg.resolve(); pkg"precompile"'' returned a non-zero code: 1
dehann commented 11 months ago

Hi @sanderboers48 ,Yes we can help. Thanks for the error log, we'll work through and get back to you. Are you looking to run the examples from JuliaLang or Python?