SomNode(X,20) - Githubissues

WhirlFirst / somde

Algorithm for finding gene spatial pattern based on Gaussian process accelerated by SOM

MIT License

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Closed rocketeer1998 closed 4 months ago

rocketeer1998 commented 4 months ago

Hi @WhirlFirst , thanks for your contribution to SOMDE! I want to know more details about your documentation. What does 20 mean in

from somde import SomNode
som = SomNode(X,20)

Empirically, the number of SOM spots is reversely proportional to this value. But I don't know why.

I'm looking forward to your reply!

WhirlFirst commented 4 months ago

Hi, 20 is the neighbor number, as defined in the manuscript:

rocketeer1998 commented 4 months ago

Clear explanation!