Closed Thorfin closed 4 years ago
I've tried "normal fixes" for this issue but they don't fix it in this case, I think it might be to do with the WSL element?
Run this
sudo dnf upgrade --refresh rpm glibc
sudo rm /var/lib/rpm/.rpm.lock
sudo dnf upgrade dnf
And try again.
From: https://github.com/WhitewaterFoundry/Fedora-Remix-for-WSL/issues/46#issuecomment-531488924
The above just hung for me and didn't do anything.
I found https://github.com/WhitewaterFoundry/Pengwin-Enterprise/issues/20 and followed:
sudo -s cd /var/lib/rpm rpm --rebuilddb dd if=/dev/zero of=db.001 bs=1M count=1 dd if=/dev/zero of=db.002 bs=1M count=1 dd if=/dev/zero of=__db.003 bs=1M count=1 rpm -qa rpm yum install vim
Which seems to have fixed the issue now.
Thankyou for your help.
A fix was uploaded to the store with the version 1.30.5.0 if someone can check if the error is gone away.
I can't comment on the store version, but @Thorfin's resolution worked for me in 1.30.1.0 that I downloaded from here.
sudo dnf upgrade --refresh rpm glibc sudo rm /var/lib/rpm/.rpm.lock sudo dnf upgrade dnf
Same issue, this worked for me.
@crramirez's solution worked for me too, even if the two dnf commands said "nothing to do" haha.
The above just hung for me and didn't do anything.
I found https://github.com/WhitewaterFoundry/Pengwin-Enterprise/issues/20 and followed:
sudo -s cd /var/lib/rpm rpm --rebuilddb dd if=/dev/zero of=db.001 bs=1M count=1 dd if=/dev/zero of=db.002 bs=1M count=1 dd if=/dev/zero of=__db.003 bs=1M count=1 rpm -qa rpm yum install vim
Which seems to have fixed the issue now.
Thankyou for your help.
cd /var/lib/rpm
dd if=/dev/zero of=__db.001 bs=1M count=1
dd if=/dev/zero of=__db.002 bs=1M count=1
dd if=/dev/zero of=__db.003 bs=1M count=1
this worked for me.
In my case it was enough to simply delete the lock file
sudo rm /var/lib/rpm/.rpm.lock
simply, this worked in my case [windows WSL fedora 31]
In my case it was enough to simply delete the lock file
sudo rm /var/lib/rpm/.rpm.lock
yep, removing the lock file is enough.
After installing many packages just fine this error randomly occurred when trying to dnf install cmake ninja-build
. After removing the lock file and cleaning packages with sudo dnf clean packages
I was able to successfully install the packages.
Just removing the lock file worked for me, as well.
Try the new script upgrade.sh and see if it fixes it as well
The above just hung for me and didn't do anything. I found https://github.com/WhitewaterFoundry/Pengwin-Enterprise/issues/20 and followed: sudo -s cd /var/lib/rpm rpm --rebuilddb dd if=/dev/zero of=db.001 bs=1M count=1 dd if=/dev/zero of=db.002 bs=1M count=1 dd if=/dev/zero of=__db.003 bs=1M count=1 rpm -qa rpm yum install vim Which seems to have fixed the issue now. Thankyou for your help.
cd /var/lib/rpm dd if=/dev/zero of=__db.001 bs=1M count=1 dd if=/dev/zero of=__db.002 bs=1M count=1 dd if=/dev/zero of=__db.003 bs=1M count=1
this worked for me.
I tried this and it didn't fix my issue:
sudo dnf upgrade --refresh rpm glibc
sudo rm /var/lib/rpm/.rpm.lock
sudo dnf upgrade dnf
I'm not a fan of sudo -s so I tried this and it worked:
cd /var/lib/rpm/
sudo rpm --rebuilddb
sudo rpm -qa rpm
I didn't need to use dd to zero out __db.xxx files. I would have tried that next if I still had issues.
In my case, it was useful for installing libcanberrra in RHEL8
cd /var/lib/rpm
rpm --rebuilddb
rpm -qa rpm
yum install -y
libcanberra-gtk*
Result:
Installed:
libcanberra-gtk2-0.30-16.el8.x86_64
Complete!
PROBLEM BEFORE
yum
install -y libcanberra-gtk
Result: Running transaction RPM: error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch RPM: error: cannot open Packages index using db5 - (-30969) RPM: error: cannot open Packages database in /var/lib/rpm
The above just hung for me and didn't do anything. I found https://github.com/WhitewaterFoundry/Pengwin-Enterprise/issues/20 and followed: sudo -s cd /var/lib/rpm rpm --rebuilddb dd if=/dev/zero of=db.001 bs=1M count=1 dd if=/dev/zero of=db.002 bs=1M count=1 dd if=/dev/zero of=__db.003 bs=1M count=1 rpm -qa rpm yum install vim Which seems to have fixed the issue now. Thankyou for your help.
cd /var/lib/rpm dd if=/dev/zero of=__db.001 bs=1M count=1 dd if=/dev/zero of=__db.002 bs=1M count=1 dd if=/dev/zero of=__db.003 bs=1M count=1
this worked for me.
I tried this and it didn't fix my issue:
sudo dnf upgrade --refresh rpm glibc sudo rm /var/lib/rpm/.rpm.lock sudo dnf upgrade dnf
I'm not a fan of sudo -s so I tried this and it worked:
cd /var/lib/rpm/ sudo rpm --rebuilddb sudo rpm -qa rpm
I didn't need to use dd to zero out __db.xxx files. I would have tried that next if I still had issues.
Hello @BlackthornYugen
Are you using Fedora Remix 33? or 32?
Regards
Hello @BlackthornYugen
Are you using Fedora Remix 33? or 32?
Regards
@crramirez oops... I'm running Centos 8 Stream. This page turned up in a google search for my issue. I didn't even notice it was a Fedora for WSL issue.
==> /etc/os-release <==
NAME="CentOS Stream"
VERSION="8"
ID="centos"
ID_LIKE="rhel fedora"
VERSION_ID="8"
PLATFORM_ID="platform:el8"
PRETTY_NAME="CentOS Stream 8"
ANSI_COLOR="0;31"
CPE_NAME="cpe:/o:centos:centos:8"
HOME_URL="https://centos.org/"
rpm -qa rpm
In my case, it was useful for installing libcanberrra in RHEL8
cd /var/lib/rpm
rpm --rebuilddb
rpm -qa rpm
yum install -y
libcanberra-gtk*
Result: Installed: libcanberra-gtk2-0.30-16.el8.x86_64 Complete!
PROBLEM BEFORE
yum
install -y libcanberra-gtk
Result: Running transaction RPM: error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch RPM: error: cannot open Packages index using db5 - (-30969) RPM: error: cannot open Packages database in /var/lib/rpm
works for me !!! RHEL8
Hello @BlackthornYugen Are you using Fedora Remix 33? or 32? Regards
@crramirez oops... I'm running Centos 8 Stream. This page turned up in a google search for my issue. I didn't even notice it was a Fedora for WSL issue.
==> /etc/os-release <== NAME="CentOS Stream" VERSION="8" ID="centos" ID_LIKE="rhel fedora" VERSION_ID="8" PLATFORM_ID="platform:el8" PRETTY_NAME="CentOS Stream 8" ANSI_COLOR="0;31" CPE_NAME="cpe:/o:centos:centos:8" HOME_URL="https://centos.org/"
Good to know that there is a solution for this for CentOS Stream and RHEL 8
The above just hung for me and didn't do anything. I found https://github.com/WhitewaterFoundry/Pengwin-Enterprise/issues/20 and followed: sudo -s cd /var/lib/rpm rpm --rebuilddb dd if=/dev/zero of=db.001 bs=1M count=1 dd if=/dev/zero of=db.002 bs=1M count=1 dd if=/dev/zero of=__db.003 bs=1M count=1 rpm -qa rpm yum install vim Which seems to have fixed the issue now. Thankyou for your help.
cd /var/lib/rpm dd if=/dev/zero of=__db.001 bs=1M count=1 dd if=/dev/zero of=__db.002 bs=1M count=1 dd if=/dev/zero of=__db.003 bs=1M count=1
this worked for me.
This worked for me as well, thanks
Does anyone know why the dd commands fix this?
Yes, because it fails when trying to grow the files. The dd command creates files with 1MB with enough space to fill.
I just had this problem and rm -f /var/lib/rpm/__db*
fixed it at once.
@DrLove73 excellent. Also, sudo rm /var/lib/rpm/.rpm.lock
helps.
Below command worked for me
rm -f /var/lib/rpm/__db*
I just had this problem and
rm -f /var/lib/rpm/__db*
fixed it at once.
Thanks for posting. This worked for me
What the real reason for the problem 'dbenv version mismatch'? And How to fix it in the source code? such as rpm or librpm
I just needed to rebuild de database and it worked: cd /var/lib/rpm rpm --rebuilddb
Run this
sudo dnf upgrade --refresh rpm glibc sudo rm /var/lib/rpm/.rpm.lock sudo dnf upgrade dnf
And try again.
From: #46 (comment)
This worked for me
Run this
sudo dnf upgrade --refresh rpm glibc sudo rm /var/lib/rpm/.rpm.lock sudo dnf upgrade dnf
And try again.
From: #46 (comment)
You made my day. :)
Describe the bug
Run Yum update, or try to install a package using yum:
RPM: error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch RPM: error: cannot open Packages index using db5 - (-30969) RPM: error: cannot open Packages database in /var/lib/rpm The downloaded packages were saved in cache until the next successful transaction. You can remove cached packages by executing 'dnf clean packages'. Error: Could not run transaction.
To Reproduce Steps to reproduce the behavior:
Expected behavior Updates completed succesfully
Additional context I have deleted and started from scratch the whole WSL environment and yum works for one update cycle, then after an update and reboot I get the same error above.
Basic Troubleshooting Checklist
[x] I have searched Google for the error message. [x] I have checked official WSL troubleshooting documentation: https://docs.microsoft.com/en-us/windows/wsl/troubleshooting#confirm-wsl-is-enabled. [x] I have searched the official Microsoft WSL issues page: https://github.com/Microsoft/WSL/issues. [x] I have searched the WLinux issues page: https://github.com/WhitewaterFoundry/WLinux/issues. [x] I have reset WLinux: Settings->Apps->Apps & features->WLinux->Advanced Options->Reset. [x] I have disabled and re-enabled WSL in Windows Features. [x] I have run Windows 10 updates and restarted.
Windows Build
OS Version: 10.0.18362 N/A Build 18362
copy paste:
[root@SAMPC ~]# yum update whitewaterfoundry_wslu 256 B/s | 833 B 00:03
Dependencies resolved.
Package Architecture Version Repository Size
Upgrading: dnf noarch 4.2.8-2.fc30 updates 405 k dnf-data noarch 4.2.8-2.fc30 updates 45 k dnf-yum noarch 4.2.8-2.fc30 updates 42 k fontconfig x86_64 2.13.1-9.fc30 updates 253 k jbig2dec-libs x86_64 0.16-1.fc30 updates 69 k libdnf x86_64 0.35.2-3.fc30 updates 589 k libxcrypt x86_64 4.4.9-1.fc30 updates 123 k libxcrypt-compat x86_64 4.4.9-1.fc30 updates 96 k polkit-libs x86_64 0.116-2.fc30 updates 64 k python3-dnf noarch 4.2.8-2.fc30 updates 413 k python3-hawkey x86_64 0.35.2-3.fc30 updates 93 k python3-libdnf x86_64 0.35.2-3.fc30 updates 708 k vim-common x86_64 2:8.1.1991-2.fc30 updates 6.7 M vim-enhanced x86_64 2:8.1.1991-2.fc30 updates 1.4 M vim-filesystem noarch 2:8.1.1991-2.fc30 updates 28 k vim-minimal x86_64 2:8.1.1991-2.fc30 updates 619 k
Transaction Summary
Upgrade 16 Packages
Total download size: 12 M Is this ok [y/N]: y Downloading Packages: (1/16): dnf-yum-4.2.8-2.fc30.noarch.rpm 86 kB/s | 42 kB 00:00
(2/16): dnf-data-4.2.8-2.fc30.noarch.rpm 79 kB/s | 45 kB 00:00
(3/16): fontconfig-2.13.1-9.fc30.x86_64.rpm 288 kB/s | 253 kB 00:00
(4/16): jbig2dec-libs-0.16-1.fc30.x86_64.rpm 77 kB/s | 69 kB 00:00
(5/16): dnf-4.2.8-2.fc30.noarch.rpm 259 kB/s | 405 kB 00:01
(6/16): libxcrypt-compat-4.4.9-1.fc30.x86_64.rpm 265 kB/s | 96 kB 00:00
(7/16): polkit-libs-0.116-2.fc30.x86_64.rpm 269 kB/s | 64 kB 00:00
(8/16): libdnf-0.35.2-3.fc30.x86_64.rpm 609 kB/s | 589 kB 00:00
(9/16): libxcrypt-4.4.9-1.fc30.x86_64.rpm 130 kB/s | 123 kB 00:00
(10/16): python3-hawkey-0.35.2-3.fc30.x86_64.rpm 530 kB/s | 93 kB 00:00
(11/16): python3-dnf-4.2.8-2.fc30.noarch.rpm 232 kB/s | 413 kB 00:01
(12/16): python3-libdnf-0.35.2-3.fc30.x86_64.rpm 195 kB/s | 708 kB 00:03
(13/16): vim-filesystem-8.1.1991-2.fc30.noarch.rpm 272 kB/s | 28 kB 00:00
(14/16): vim-minimal-8.1.1991-2.fc30.x86_64.rpm 393 kB/s | 619 kB 00:01
(15/16): vim-enhanced-8.1.1991-2.fc30.x86_64.rpm 334 kB/s | 1.4 MB 00:04
(16/16): vim-common-8.1.1991-2.fc30.x86_64.rpm 612 kB/s | 6.7 MB 00:11
Total 809 kB/s | 12 MB 00:14
Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction RPM: error: db5 error(-30969) from dbenv->open: BDB0091 DB_VERSION_MISMATCH: Database environment version mismatch RPM: error: cannot open Packages index using db5 - (-30969) RPM: error: cannot open Packages database in /var/lib/rpm The downloaded packages were saved in cache until the next successful transaction. You can remove cached packages by executing 'dnf clean packages'. Error: Could not run transaction. [root@SAMPC ~]#