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WikiWatershed / mmw-geoprocessing

A Spark Job Server job for Model My Watershed geoprocessing.
Apache License 2.0
6 stars 6 forks source link

Subbasin: Support Streamless Children #89

Closed rajadain closed 6 years ago

rajadain commented 6 years ago

Overview

In cases when submitting a set of shapes to the /multi endpoint, with a rasterLinesJoin operation, and streamLines, such that there exist shapes in the set that don't intersect with any stream lines at all, return an empty map for nlcd_streams. This is an edge case found in the more arid parts of the country, such as Upper Wolf HUC-8 in Texas:

image

This PR handles these cases gracefully by returning an empty map.

Connects https://github.com/WikiWatershed/model-my-watershed/issues/2826

Demo

Using failing_multi_request.json.txt on develop:

$ http :8090/multi < failing_multi_request.json.txt

HTTP/1.1 500 Internal Server Error
Content-Length: 42
Content-Type: text/plain; charset=UTF-8
Date: Wed, 16 May 2018 20:56:50 GMT
Server: akka-http/10.0.9

java.util.NoSuchElementException: None.get

On this branch:

$ http :8090/multi < failing_multi_request.json.txt | jq . | grep nlcd_streams

    "nlcd_streams": {
    "nlcd_streams": {
    "nlcd_streams": {},
    "nlcd_streams": {
    "nlcd_streams": {
    "nlcd_streams": {
    "nlcd_streams": {
    "nlcd_streams": {
    "nlcd_streams": {
    "nlcd_streams": {},
    "nlcd_streams": {},
    "nlcd_streams": {
    "nlcd_streams": {
    "nlcd_streams": {
    "nlcd_streams": {
    "nlcd_streams": {},
    "nlcd_streams": {
    "nlcd_streams": {
    "nlcd_streams": {
    "nlcd_streams": {
    "nlcd_streams": {
    "nlcd_streams": {
    "nlcd_streams": {

Upper Wolf with values:

image

Notes

I also tried making rasterEmptyResults which would gather the right keys and set them to 0, like this:

  "nlcd_streams": {
    "List(11)": 0.0,
    "List(21)": 0.0,
    "List(22)": 0.0,
    "List(23)": 0.0,
    "List(24)": 0.0,
    "List(52)": 0.0,
    "List(71)": 0.0,
    "List(82)": 0.0,
    "List(95)": 0.0
  }

That approach looked like this:

private def rasterEmptyResult(
  rasterLayers: Seq[TileLayerCollection[SpatialKey]],
  multiPolygon: MultiPolygon
): Map[String, Double] = {
  val metadata = rasterLayers.head.metadata
  val pixelGroups: TrieMap[List[Int], Double] = TrieMap.empty

  joinCollectionLayers(rasterLayers).par
    .foreach({ case (key, tiles) =>
      val extent: Extent = metadata.mapTransform(key)
      val re: RasterExtent = RasterExtent(extent, metadata.layout.tileCols,
          metadata.layout.tileRows)

      Rasterizer.foreachCellByMultiPolygon(multiPolygon, re) { case (col, row) =>
        val pixelGroup: List[Int] = tiles.map(_.get(col, row)).toList
        pixelGroups.getOrElseUpdate(pixelGroup, 0.0)
      }
    })

  pixelGroups
    .map { case (k, v) => k.toString -> v }
    .toMap
}

and then replacing the return:

diff --git a/api/src/main/scala/Geoprocessing.scala b/api/src/main/scala/Geoprocessing.scala
index 4890e3a..5a1b37a 100644
--- a/api/src/main/scala/Geoprocessing.scala
+++ b/api/src/main/scala/Geoprocessing.scala
@@ -72,7 +72,7 @@ trait Geoprocessing extends Utils {
                       rasterLinesJoin(layers, Seq(lines))
                         .mapValues(_.toDouble)
                     case None =>
-                      Map[String, Double]()
+                      rasterEmptyResult(layers, shape)
                   }
                 }
                 case None =>

But since in other cases we return only the non-zero values:

  "nlcd_streams": {
    "List(71)": 1.0
  }

I decided to stick to it and return an empty map for speed and simplicity. I also tested with MMW to ensure that it didn't break the app, and it doesn't seem to.

Testing Instructions

kellyi commented 6 years ago

I'm encountering this error when trying to run setup, but we never really documented the current requirements:

pkg_resources.DistributionNotFound: The 'pipenv==11.8.3' distribution was not found and is required by the application

Going to check back through past PRs to how to remedy.

kellyi commented 6 years ago

Running

brew upgrade pipenv

fixed that enough to enable the service to start

kellyi commented 6 years ago

Ran this

cat failing_multi_request.json.txt | http POST :8090/multi | pbcopy

and got this response:

{"huc12__60107":{"gwn":{"List(2)":30014.0,"List(4)":1122.0,"List(3)":2551.0,"List(0)":23053.0,"List(1)":22327.0},"avg_awc":{"List(2)":16.56848576341025,"List(4)":16.696871977651394,"List(3)":16.574598672015206,"List(0)":13.851057512901955,"List(1)":16.01325721025691},"nlcd_slope":{"List(31, 3)":2.0,"List(0, 8)":1.0,"List(22, 0)":191.0,"List(21, 3)":203.0,"List(71, 12)":96.0,"List(52, 14)":2.0,"List(52, 10)":8.0,"List(52, 17)":1.0,"List(23, 1)":2.0,"List(21, 6)":3.0,"List(82, 0)":29188.0,"List(21, 0)":1900.0,"List(0, 5)":16.0,"List(52, 1)":1988.0,"List(31, 5)":4.0,"List(21, 10)":3.0,"List(31, 0)":16.0,"List(22, 1)":94.0,"List(95, 1)":16.0,"List(71, 5)":2358.0,"List(71, 1)":11259.0,"List(52, 0)":7697.0,"List(21, 1)":688.0,"List(71, 17)":10.0,"List(82, 3)":10.0,"List(71, 0)":11786.0,"List(71, 10)":146.0,"List(23, 0)":2.0,"List(22, 5)":19.0,"List(0, 6)":2.0,"List(0, 0)":104.0,"List(71, 6)":818.0,"List(21, 5)":49.0,"List(71, 8)":331.0,"List(11, 0)":20.0,"List(95, 0)":170.0,"List(52, 3)":238.0,"List(0, 3)":40.0,"List(22, 6)":6.0,"List(0, 1)":89.0,"List(71, 15)":30.0,"List(42, 0)":144.0,"List(71, 14)":50.0,"List(0, 10)":3.0,"List(52, 5)":100.0,"List(22, 3)":40.0,"List(52, 6)":41.0,"List(52, 12)":1.0,"List(22, 10)":1.0,"List(52, 15)":3.0,"List(71, 3)":6652.0,"List(21, 8)":2.0,"List(52, 8)":14.0,"List(82, 1)":2410.0},"nlcd_kfactor":{"List(42)":0.20000000298023224,"List(22)":0.22432478774137307,"List(71)":0.22581930024787528,"List(21)":0.2199410129275717,"List(0)":0.21647059029223872,"List(31)":0.2850909043442119,"List(52)":0.21770930495439786,"List(11)":0.17000000178813934,"List(23)":0.20000000298023224,"List(82)":0.20426037968792846,"List(95)":0.18967742192488846},"recess_coef":{"List(0)":30.9468085106383},"nlcd_streams":{"List(0)":1.0,"List(21)":5.0,"List(71)":247.0,"List(52)":17.0},"soiln":{"List(0)":422.57142857142856},"soilp":{"List(0)":396.70212765957444},"slope":{"List(0)":1.0215843651292809},"nlcd_soil":{"List(0, 4)":17.0,"List(21, 3)":1725.0,"List(23, 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1)":5139.0},"nlcd_kfactor":{"List(22)":0.25980367549859423,"List(71)":0.23237779204383466,"List(41)":0.2800000011920929,"List(21)":0.2639829837739792,"List(24)":0.3199999928474426,"List(31)":0.21569999897668898,"List(90)":0.1767826093279797,"List(52)":0.22253753954002112,"List(11)":0.17000000178813934,"List(23)":0.25373154168561,"List(82)":0.27542209280928776},"recess_coef":{"List(0)":36.112426035502956},"nlcd_streams":{"List(71)":1388.0,"List(21)":19.0,"List(31)":1.0,"List(90)":10.0,"List(52)":356.0},"soiln":{"List(0)":370.67251461988303},"soilp":{"List(0)":285.62721893491124},"slope":{"List(0)":2.30541483828597},"nlcd_soil":{"List(90, 1)":18.0,"List(31, 3)":13.0,"List(21, 3)":1024.0,"List(23, 2)":106.0,"List(23, 1)":39.0,"List(31, 2)":154.0,"List(71, 4)":192.0,"List(52, 1)":5337.0,"List(31, 4)":13.0,"List(22, 1)":72.0,"List(82, 4)":170.0,"List(71, 1)":36944.0,"List(22, 2)":143.0,"List(21, 1)":407.0,"List(82, 3)":5958.0,"List(21, 4)":7.0,"List(52, 4)":131.0,"List(71, 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3)":49.0,"List(82, 1)":8123.0},"nlcd_kfactor":{"List(22)":0.2955560916434609,"List(71)":0.26822549415188385,"List(21)":0.2796650340348871,"List(0)":0.2735546573650005,"List(31)":0.31450000405311584,"List(52)":0.26520787222133263,"List(11)":0.21028571895190648,"List(82)":0.27923108659251766,"List(95)":0.20147581166103193},"recess_coef":{"List(0)":25.585492227979273},"nlcd_streams":{},"soiln":{"List(0)":477.75916230366494},"soilp":{"List(0)":479.80829015544043},"slope":{"List(0)":0.12529317013483854},"nlcd_soil":{"List(31, 3)":29.0,"List(0, 4)":23.0,"List(21, 3)":7569.0,"List(71, 4)":1568.0,"List(11, 3)":96.0,"List(82, 4)":1377.0,"List(95, 3)":507.0,"List(82, 3)":123675.0,"List(21, 4)":152.0,"List(52, 4)":1787.0,"List(95, 4)":4389.0,"List(71, 2)":109.0,"List(22, 4)":21.0,"List(82, 2)":1329.0,"List(52, 3)":17545.0,"List(95, 2)":3.0,"List(0, 3)":407.0,"List(52, 2)":402.0,"List(11, 2)":9.0,"List(21, 2)":105.0,"List(22, 3)":398.0,"List(71, 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kellyi commented 6 years ago

For reference this is the specific error generated on develop:

Exception: java.util.NoSuchElementException: None.get
rajadain commented 6 years ago

Thanks for taking a look! Going to merge this and make a new release.