WilsonSayresLab XYalign issues

WilsonSayresLab / XYalign

Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data

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issues

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PREPARE_REFERENCE

#23 pickpingk closed 8 months ago
2
Correct parameters for inferring Y chromosome between two de novo genomes

#22 stupornova33 closed 2 years ago
4
Read balance per window fix

#21 thw17 closed 5 years ago
0
Merge and close noY_support

#20 thw17 closed 6 years ago
0
Version 1.0.0dev - merge noY_support branch

#19 thw17 closed 6 years ago
0
Run bwa indexing in parallel

#18 thw17 opened 7 years ago
0
Make bwa indexing conditional for withY if no reference_mask provided

#17 thw17 opened 7 years ago
0
Add CRAM and SAM support

#16 thw17 opened 7 years ago
0
Bruno's edits

#15 BrunoGrandePhD closed 5 years ago
2
Exome integration

#14 thw17 closed 7 years ago
0
Sambamba testing

#13 thw17 closed 7 years ago
0
Reference depth/quality filter

#12 mathbionerd closed 7 years ago
2
Strip & realign high coverage 1000genomes samples

#11 mathbionerd closed 7 years ago
12
2 - Infer ploidy of X and Y - create framework to compare input sample data to reference set

#10 mathbionerd closed 7 years ago
1
1 - Infer ploidy of X and Y - model typical situations of read balance for reference comparison

#9 mathbionerd opened 7 years ago
27
Identify differences in variant calling for X and Y before/after XYalign

#8 mathbionerd closed 7 years ago
6
Finalize/polish plotting functions for sexChromosomeBamTraverse.py

#7 mathbionerd closed 7 years ago
2
Incorporate reference genome mask into XYalign

#6 mathbionerd closed 7 years ago
1
Generate reference genome masks

#5 mathbionerd closed 7 years ago
18
Develop re-aligning pipeline for X/Y complement

#4 mathbionerd closed 7 years ago
17
Combine into a single framework

#3 mathbionerd closed 7 years ago
1
Precision FDA

#2 mathbionerd opened 7 years ago
2
Publications

#1 mathbionerd closed 7 years ago
0