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WilsonSayresLab
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XYalign
Identifying, understanding, and correcting technical biases on the sex chromosomes in next-generation sequencing data
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PREPARE_REFERENCE
#23
pickpingk
closed
8 months ago
2
Correct parameters for inferring Y chromosome between two de novo genomes
#22
stupornova33
closed
2 years ago
4
Read balance per window fix
#21
thw17
closed
5 years ago
0
Merge and close noY_support
#20
thw17
closed
6 years ago
0
Version 1.0.0dev - merge noY_support branch
#19
thw17
closed
6 years ago
0
Run bwa indexing in parallel
#18
thw17
opened
7 years ago
0
Make bwa indexing conditional for withY if no reference_mask provided
#17
thw17
opened
7 years ago
0
Add CRAM and SAM support
#16
thw17
opened
7 years ago
0
Bruno's edits
#15
BrunoGrandePhD
closed
5 years ago
2
Exome integration
#14
thw17
closed
7 years ago
0
Sambamba testing
#13
thw17
closed
7 years ago
0
Reference depth/quality filter
#12
mathbionerd
closed
7 years ago
2
Strip & realign high coverage 1000genomes samples
#11
mathbionerd
closed
7 years ago
12
2 - Infer ploidy of X and Y - create framework to compare input sample data to reference set
#10
mathbionerd
closed
7 years ago
1
1 - Infer ploidy of X and Y - model typical situations of read balance for reference comparison
#9
mathbionerd
opened
7 years ago
27
Identify differences in variant calling for X and Y before/after XYalign
#8
mathbionerd
closed
7 years ago
6
Finalize/polish plotting functions for sexChromosomeBamTraverse.py
#7
mathbionerd
closed
7 years ago
2
Incorporate reference genome mask into XYalign
#6
mathbionerd
closed
7 years ago
1
Generate reference genome masks
#5
mathbionerd
closed
7 years ago
18
Develop re-aligning pipeline for X/Y complement
#4
mathbionerd
closed
7 years ago
17
Combine into a single framework
#3
mathbionerd
closed
7 years ago
1
Precision FDA
#2
mathbionerd
opened
7 years ago
2
Publications
#1
mathbionerd
closed
7 years ago
0