WinawerLab / MRI_tools

Matlab and Python tools for MRI analyses
GNU General Public License v3.0
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Bids preproc #1

Closed billbrod closed 6 years ago

billbrod commented 6 years ago

This adds the ability for the preprocessing script to work with data that has the BIDS directory structure, instead of the prisma structure. The user specifies which way the data is structured using the dir_structure argument.

It also adds a plugin_args argument, which the user can use to specify, on the command line, keyword arguments to be sent to the plugin. This is useful for limiting the number of cores / amount of memory the MultiProc argument will use, for example.

There's also some additions to the prisma_to_BIDS.py functions.

The preprocessing script's default behavior is unchanged.