Simplify calls to vista prf container

WinawerLab / SampleData

Code related to the processing of the Winawer lab sample dataset

MIT License

0 stars 2 forks source link

Simplify calls to vista prf container #12

Open JWinawer opened 3 years ago

JWinawer commented 3 years ago

Right now there are many levels of complexity, using different githutb repos and docker, singularity, matlab etc. We would like to get something relatively simple that points to a BIDS directory and a json file with input arguments.

JWinawer commented 3 years ago

Currently, s4_vistaPRF.sh will fail on the cluster because it calls a docker container, which cannot run on the cluster. Moreover, we found recently that the vista pRF code is simpler and cleaner to call from the Matlab command line rather than using a container.

So... Let's just remove the calls to the containers.