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WinawerLab / SampleData

Code related to the processing of the Winawer lab sample dataset
MIT License
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Make code run on cluster (s0) #8

Closed JWinawer closed 3 years ago

JWinawer commented 3 years ago

s0 downloads the data. For now, it downloads it to a folder inside the folder containing the code. On the cluster, we would want the code to live in our home directory, and the data to live in scratch. So we need to fix either setup.sh or s0...

billbrod commented 3 years ago

Thought we found a solution for this in #15, but set -e at the top of our scripts means we can't use anything that returns a non-zero error code (we had been seeing if module list ran successfully).