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Winnie09 / Lamian

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Error: The 'x' data must be in the range 0 to 9.99856e-07 - lamian_test #12

Closed Sayyam-Shah closed 1 year ago

Sayyam-Shah commented 1 year ago

Hello,

Thank you for the amazing tool. I am trying to run TDE test on my data. I'm using pseudotime values from monocle3, and my expression matrix are aucell scores from pyscenic. 

lamian_test(expr = exprmatrix, cellanno = cellanno, pseudotime = pseudotime, design = design, test.type = 'time', permuiter = 5, ncores = 1)

However, I am getting the below when trying to run lamian_test. May you help me debug the error? 

Error in splineDesign(Aknots, x, ord) : 
the 'x' data must be in the range 0 to 9.99856e-07 unless you set 'outer.ok = TRUE'

I'm unable to pass the argument outer.ok = TRUE in lamian_test. I get the below error. 

Error in lamian_test(expr = exprmatrix, cellanno = cellanno, pseudotime = pseudotime,  : 
  unused argument (outer.ok = TRUE)