[REFRACTOR] 🔀: Moved the protocol to their respective subdirectories.

[Witty-Wizard]

Related Issue

This PR addresses #20.

Description

• Moved the protocol to their respective subdirectories.
• Changes the includes to be compatible with the changes
• Checked the compilation using CI

Checklist:

• [x] I have performed a self-review of my code
• [x] I have read and followed the Contribution Guidelines.
• [x] I have tested the changes thoroughly before submitting this pull request.
• [x] I have provided relevant issue numbers, screenshots, and videos after making the changes.
• [x] I have commented my code, particularly in hard-to-understand areas.